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The map label for this gene is syd [H]

Identifier: 227081078

GI number: 227081078

Start: 921101

End: 921697

Strand: Direct

Name: syd [H]

Synonym: VCM66_0860

Alternate gene names: 227081078

Gene position: 921101-921697 (Clockwise)

Preceding gene: 227081072

Following gene: 227081079

Centisome position: 31.84

GC content: 50.25

Gene sequence:

>597_bases
GTGCCAGTGTCATTAACGAGGCGGCGCAAACTCAACATGGAGATGATTATGACGCAAAGCGTAGTGCAAGCCTTGAGTGC
ATTCAGTCAGCGTTTTCTACAACATTGTGCCCAGCAAACCGGCCAATTACCGGAAAATGATGAATTATTGGGACTGGCTT
CGCCTTGTGTGGTCGAAGAGCTGACCGATGTGGTGCGCTGGCGTCCCGTCAATCGTGAGGTTTGGGCGGATTTCAGTAAT
GTCGAGCGGGCGATTGAGCTCACGCTGCACGAGGATATTAAAGCATTTTACGCCAGCCAGTTTAGTGCTGATATGCCTGC
GCAGTGGCGAGGCCGAGAGCTGACTTTGCTGCAAGTATGGAGTGAAGACGATTTCACCCGCCTGCAGGAAAACATCTTGG
GGCATTTGGTGATGCAGCGCCGCTTAAAGCAAAAGCCAACCGTATTTATCGCCACAACCGAGGATGAAATGGCAGTGGTT
TCAGTGTGTAACCTGAGTGGTAATGTGATCCTCGAGAAATTAGGGACAGCGCAGCGTGAAGTATTGACTGCCGATCTTGA
GACGTTTTTAGAACAGCTTGAACCAAAGGTGAATTGA

Upstream 100 bases:

>100_bases
TTTTACCCAGAGTTAAGCTTGCCAGCTCTTTGGCATCGGAATATTTGCTCATGTTTTTCAGTCGATTCAATTAGAATGTG
CAGAATTTTACGCAATCCCA

Downstream 100 bases:

>100_bases
GATGTACGTGGTTGAGTTGGAGTTTGAGTGTTTTGATAACACCACCATCAGCGCCGTGGATAAAGCCATCAACGGCTTGA
TGGATGCGCTGCGCTATAAC

Product: SecY interacting protein Syd

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MPVSLTRRRKLNMEMIMTQSVVQALSAFSQRFLQHCAQQTGQLPENDELLGLASPCVVEELTDVVRWRPVNREVWADFSN
VERAIELTLHEDIKAFYASQFSADMPAQWRGRELTLLQVWSEDDFTRLQENILGHLVMQRRLKQKPTVFIATTEDEMAVV
SVCNLSGNVILEKLGTAQREVLTADLETFLEQLEPKVN

Sequences:

>Translated_198_residues
MPVSLTRRRKLNMEMIMTQSVVQALSAFSQRFLQHCAQQTGQLPENDELLGLASPCVVEELTDVVRWRPVNREVWADFSN
VERAIELTLHEDIKAFYASQFSADMPAQWRGRELTLLQVWSEDDFTRLQENILGHLVMQRRLKQKPTVFIATTEDEMAVV
SVCNLSGNVILEKLGTAQREVLTADLETFLEQLEPKVN
>Mature_197_residues
PVSLTRRRKLNMEMIMTQSVVQALSAFSQRFLQHCAQQTGQLPENDELLGLASPCVVEELTDVVRWRPVNREVWADFSNV
ERAIELTLHEDIKAFYASQFSADMPAQWRGRELTLLQVWSEDDFTRLQENILGHLVMQRRLKQKPTVFIATTEDEMAVVS
VCNLSGNVILEKLGTAQREVLTADLETFLEQLEPKVN

Specific function: Interacts with the secY protein in vivo. May bind preferentially to an uncomplexed state of secY, thus functioning either as a chelating agent for excess secY in the cell or as a regulatory factor that negatively controls the translocase function [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Note=Loosely associated with the cytoplasmic side of the inner membrane, probably via secY (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Syd family [H]

Homologues:

Organism=Escherichia coli, GI1789157, Length=179, Percent_Identity=45.8100558659218, Blast_Score=164, Evalue=3e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009948 [H]

Pfam domain/function: PF07348 Syd [H]

EC number: NA

Molecular weight: Translated: 22703; Mature: 22572

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVSLTRRRKLNMEMIMTQSVVQALSAFSQRFLQHCAQQTGQLPENDELLGLASPCVVEE
CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHH
LTDVVRWRPVNREVWADFSNVERAIELTLHEDIKAFYASQFSADMPAQWRGRELTLLQVW
HHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEC
SEDDFTRLQENILGHLVMQRRLKQKPTVFIATTEDEMAVVSVCNLSGNVILEKLGTAQRE
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEHHHHHCCCCCHHHHHHCHHHHH
VLTADLETFLEQLEPKVN
HHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PVSLTRRRKLNMEMIMTQSVVQALSAFSQRFLQHCAQQTGQLPENDELLGLASPCVVEE
CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHH
LTDVVRWRPVNREVWADFSNVERAIELTLHEDIKAFYASQFSADMPAQWRGRELTLLQVW
HHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEC
SEDDFTRLQENILGHLVMQRRLKQKPTVFIATTEDEMAVVSVCNLSGNVILEKLGTAQRE
CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEHHHHHCCCCCHHHHHHCHHHHH
VLTADLETFLEQLEPKVN
HHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]