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The map label for this gene is recN

Identifier: 227081028

GI number: 227081028

Start: 874185

End: 875849

Strand: Reverse

Name: recN

Synonym: VCM66_0809

Alternate gene names: 227081028

Gene position: 875849-874185 (Counterclockwise)

Preceding gene: 227081029

Following gene: 227081027

Centisome position: 30.28

GC content: 48.17

Gene sequence:

>1665_bases
ATGCTGGCTCACTTAAGTATCAATAACTTCGCTATCGTAAAGTCACTACAACTCGAATTATCAAAAGGAATGACCACCAT
CACCGGTGAAACTGGTGCTGGTAAATCCATTGCGATTGATGCTTTAGGTTTATGTCTCGGTGGTCGAGCCGAAGCCAGCA
TGGTGCGTCAAGGTGAAGATAAAACCGAAGTCAGCGCCGCCTTTCATCTGGATAACAATCTGCTCGCTAGCCGTTGGTTA
GAAGATAATGAACTGCTTGAAGGCAAAGAGTGCATTCTGCGCCGAATCATCACCAAAGATGGGCGCTCTAAAGCCTTTAT
TAATGGCAGCCCAGTTCCGCTCTCTCAACTCAAAACATTGGGGCAACTGCTGATCAATGTGCATGGTCAACACGCACATC
AGCAACTGATGAAACCGGAATATCAGCTCAGCATGCTTGATCAATACGCAGGTCATGCAGACTTGCTCAAAGCCACGCGT
CACGCCTATCAAAATTGGCGTCAAGCGAGCAATCAGCTCAAACAGCTGCGCGAAAATAGCCAACAAAATCAGGCACAATT
ACAACTTTTGGAATACCAAATCAAAGAGCTCAACGAATTGGCTCTCGGTGAGGATGAGTTTGTCGAGCTAGAACAAGAGC
AAAAACGCTTAGCCAATAGCGGCGATCTGGCACTCAACTGCCAACGCGCGATTGAACTGCTCAATGAAGGGGAAGAAGTA
AACGCCTTAGGCCTTTTACAAAGTGTTAGCCATACGCTGATTGATCTGGCTGAAATGGATAGCAAACTGACAGCGCTCCC
TTCAATGGTGGCCGAAGCGCTGATCCAACTTGAAGAGACTTACCATGAACTGCGCAATTACTTGGATTCGATTGATGTCG
ACCCAGAACGCATGGCGTATGTAGAAGAGCGCTACTCCAAAGTCATGTCGCTCGCGCGTAAACATCATGTACTGCCAGAA
GAGCTGTATCAGCATCACCAAGCACTCTTACAGCAAATTGCTCAGCTAGATTGTTCTGATGAGAAAATGTCAGCACTCGC
GAGTGAAGTCGACGTGCTCTACCAAACGTTTGTTGCGGCCGCTGACAAACTGCACAAATCTCGTGTTCGCTATGCCAAAG
AATTGGATAAATTGATTAGCCAAAGCATGCATGAGCTGAGCATGGAAAAAGCGCAATTCAAAATCGAAGTGCAGCAAGAC
AGCGCGCACTCATCGCCATTAGGTTTTGATGCCGTGACTTTCTTAGTCTCGACGAACCCGGGTCAACCGCTGCAACCCAT
CGCCAAAGTGGCCTCTGGTGGTGAACTGTCACGGATGTCATTGGCGATCCAAGTGATTACTGCGCAGAAAGTCGATACTC
CAAGCCTGATTTTTGATGAAGTTGACGTGGGTATTTCAGGGCCAACAGCAGCCGTAGTTGGCAAACTACTGCGCAAATTG
GGCGAGTCGACTCAAGTACTGTGTGTCACCCACTTACCGCAAGTGGCAGGTTGCGGACACCATCAACTGTTTGTCGCCAA
ACAGACCAAAGCAGGCAAAACCGAAACGCAAATGCTCAAACTGGATCAAGAACAGCGCATTGCTGAACTTGCACGCTTGC
TCGGAGGCAGCCAAATTACCGAATCCACGCTCGCGAATGCTAAAGAGCTATTAATCGCAGCCTAA

Upstream 100 bases:

>100_bases
TAAAAGTGACCAAAAAATTTTACCTGAGTGACTTTACTGTATAAAGAAACAGTATAAACTGTTTAAACATACAGTATTGG
TTAATCATACAGGTGCAAAC

Downstream 100 bases:

>100_bases
TTTCATATCGCATCACTGGATTTTTTGTTCAGCTTTGCAACCAAACTCAAAATTCACAGTCTCAATAGGCTCAGAGCACG
ATCGAGGTTTTTACATCTGC

Product: recombination and repair protein

Products: NA

Alternate protein names: Recombination protein N

Number of amino acids: Translated: 554; Mature: 554

Protein sequence:

>554_residues
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKATR
HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEQKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMSLARKHHVLPE
ELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVQQD
SAHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA

Sequences:

>Translated_554_residues
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKATR
HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEQKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMSLARKHHVLPE
ELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVQQD
SAHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA
>Mature_554_residues
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKATR
HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEQKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMSLARKHHVLPE
ELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVQQD
SAHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA

Specific function: May be involved in recombinational repair of damaged DNA

COG id: COG0497

COG function: function code L; ATPase involved in DNA repair

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recN family

Homologues:

Organism=Escherichia coli, GI48994901, Length=553, Percent_Identity=56.2386980108499, Blast_Score=610, Evalue=1e-176,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECN_VIBC3 (A5F379)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- EMBL:   U39068
- ProteinModelPortal:   A5F379
- STRING:   A5F379
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A0378
- eggNOG:   COG0497
- HOGENOM:   HBG632212
- OMA:   GEMSRFL
- ProtClustDB:   PRK10869
- BioCyc:   VCHO345073:VC0395_A0378-MONOMER
- GO:   GO:0005694
- InterPro:   IPR004604
- InterPro:   IPR003395
- TIGRFAMs:   TIGR00634

Pfam domain/function: PF02463 SMC_N

EC number: NA

Molecular weight: Translated: 61253; Mature: 61253

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGED
CEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCCCEEEHHHHHHHCCCCHHHHHHHCCCC
KTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTL
HHHHHHHEECCCCHHHHHCCCCCHHCCHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHH
GQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKATRHAYQNWRQASNQLKQLRENS
HHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QQNQAQLQLLEYQIKELNELALGEDEFVELEQEQKRLANSGDLALNCQRAIELLNEGEEV
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCH
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VEERYSKVMSLARKHHVLPEELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
ADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVQQDSAHSSPLGFDAVTFLVSTNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHEEEEEECCC
GQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
CCCHHHHHHHHCCCCHHHHHHHEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQIT
CCCCEEEEEECCHHHHCCCCCEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHHHCCCHHH
ESTLANAKELLIAA
HHHHHHHHHHHCCC
>Mature Secondary Structure
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGED
CEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCCCEEEHHHHHHHCCCCHHHHHHHCCCC
KTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTL
HHHHHHHEECCCCHHHHHCCCCCHHCCHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHH
GQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKATRHAYQNWRQASNQLKQLRENS
HHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QQNQAQLQLLEYQIKELNELALGEDEFVELEQEQKRLANSGDLALNCQRAIELLNEGEEV
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCH
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VEERYSKVMSLARKHHVLPEELYQHHQALLQQIAQLDCSDEKMSALASEVDVLYQTFVAA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
ADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVQQDSAHSSPLGFDAVTFLVSTNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHEEEEEECCC
GQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
CCCHHHHHHHHCCCCHHHHHHHEEEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQIT
CCCCEEEEEECCHHHHCCCCCEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHHHCCCHHH
ESTLANAKELLIAA
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA