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The map label for this gene is smpA [H]

Identifier: 227081027

GI number: 227081027

Start: 873667

End: 874077

Strand: Reverse

Name: smpA [H]

Synonym: VCM66_0808

Alternate gene names: 227081027

Gene position: 874077-873667 (Counterclockwise)

Preceding gene: 227081028

Following gene: 227081024

Centisome position: 30.22

GC content: 45.01

Gene sequence:

>411_bases
TTGTTTATTATCAGCCAAGTTTTTAGCCCTGAGGGACAGAGAGTTTTAACAATGCAGTTTACTAAGTGGTTCATCGCCCT
TCCCCTTGCCGTCACCGCCTTATCCGGCTGCTCTTTATTAGAGCGCTTGGTGTATCGAATCGATATCAATCAGGGTAACT
ATGTTGATCAACAATCCGTCGATCAGCTCAAGTTTGGCATGAGCAAAGATCAAGTTCGTTTTGTTCTCGGCTCACCTATG
TTGGTTGAAAATGGCTACCCAGATACTTGGTATTACATTTACCACCACACCCAAGGCCATAACGATCCGGTACAAAAGAA
CCTGATCGTGAAATTTAACGATGGTGGCAAGCTAGTCAATGTCGCGGGAGATTTCCCTGCTGGCGATTCTTTCTTCGAAG
GCGTCAACTAA

Upstream 100 bases:

>100_bases
TCGCATCACTGGATTTTTTGTTCAGCTTTGCAACCAAACTCAAAATTCACAGTCTCAATAGGCTCAGAGCACGATCGAGG
TTTTTACATCTGCTCTGAGC

Downstream 100 bases:

>100_bases
GCGCACTTTGCTGATTAAAAAAGAAAAGGCTTTCACAAGCCTTTTCTTTTTTTGGTGTTGATTCTTCAGCCGTCACATTA
ACTTTGATTAGCGGCCGCTT

Product: small protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MFIISQVFSPEGQRVLTMQFTKWFIALPLAVTALSGCSLLERLVYRIDINQGNYVDQQSVDQLKFGMSKDQVRFVLGSPM
LVENGYPDTWYYIYHHTQGHNDPVQKNLIVKFNDGGKLVNVAGDFPAGDSFFEGVN

Sequences:

>Translated_136_residues
MFIISQVFSPEGQRVLTMQFTKWFIALPLAVTALSGCSLLERLVYRIDINQGNYVDQQSVDQLKFGMSKDQVRFVLGSPM
LVENGYPDTWYYIYHHTQGHNDPVQKNLIVKFNDGGKLVNVAGDFPAGDSFFEGVN
>Mature_136_residues
MFIISQVFSPEGQRVLTMQFTKWFIALPLAVTALSGCSLLERLVYRIDINQGNYVDQQSVDQLKFGMSKDQVRFVLGSPM
LVENGYPDTWYYIYHHTQGHNDPVQKNLIVKFNDGGKLVNVAGDFPAGDSFFEGVN

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=87, Percent_Identity=41.3793103448276, Blast_Score=88, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 15384; Mature: 15384

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIISQVFSPEGQRVLTMQFTKWFIALPLAVTALSGCSLLERLVYRIDINQGNYVDQQSV
CEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHH
DQLKFGMSKDQVRFVLGSPMLVENGYPDTWYYIYHHTQGHNDPVQKNLIVKFNDGGKLVN
HHHHCCCCCCCEEEEECCCEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCEEEE
VAGDFPAGDSFFEGVN
ECCCCCCCCHHCCCCC
>Mature Secondary Structure
MFIISQVFSPEGQRVLTMQFTKWFIALPLAVTALSGCSLLERLVYRIDINQGNYVDQQSV
CEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHH
DQLKFGMSKDQVRFVLGSPMLVENGYPDTWYYIYHHTQGHNDPVQKNLIVKFNDGGKLVN
HHHHCCCCCCCEEEEECCCEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCEEEE
VAGDFPAGDSFFEGVN
ECCCCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA