Click here to switch to the map view.

The map label for this gene is 227080990

Identifier: 227080990

GI number: 227080990

Start: 823551

End: 824255

Strand: Reverse

Name: 227080990

Synonym: VCM66_0769

Alternate gene names: NA

Gene position: 824255-823551 (Counterclockwise)

Preceding gene: 227080991

Following gene: 227080987

Centisome position: 28.5

GC content: 32.91

Gene sequence:

>705_bases
ATGATAGTAAAAGAAAAAACACATATTAAAACTAGTAATTTCAAACAAGACTTAGGCAATCAAGTAGAAAATGATGTCGC
ATTCTATTTGAGACGTCATTTTTCCGAAAATGAGAGCATCTTCATTTATAATGATTTACGTATTGAGCATAAAGGTGAAA
TCGCACAAATAGACCACCTTGTTGTTTATAAAAAAGGGTTTGTTATTATTGAATCAAAATCCATCAAGGGTACTGTTCAA
ATTAACAAACAGCTAGAATGGCAAAGAACGGTTCGTGGAAAATGGGTCGGCATGCCATCTCCTATCACCCAAGCAGAAAT
GCAAACCAAACTATTGAAAGCATTATTAAATGATAATGCAGAACAGTTACTAGAAAAGATATTAATGCTTCAAGGCTATT
TTGGCGGCCGATGCTGGGACACTCTTTGCGCGGCTTCGAATGATGCAATCATCGATAGAGACAACATCCCATCAAAAATA
TCACCAATGATTATTAAATCAGAACAAATTGCTAATCGAGTGGAAGAAATAATAGCTAGTAGATCGAGTATCTTAAAACC
AAATCCAACATTTAGTGATAATGAGCTTCAAAATATTAAAAACTTCTTAATTGAAGCACACAAGAACCCGTTAATCGAAG
ATAAAAAATTCACTAATAAGTTCAATAAACCAGATAACATTACACATCAAACAGAAAAAAAATAA

Upstream 100 bases:

>100_bases
AAATAATAGTCAGCAATCACAGACTCGATGACGATGAATAAGGCATAATTCAAATATATAAATTTTAAATAACAATATGT
AAAAAAAAGGCTAGGTAGTT

Downstream 100 bases:

>100_bases
ACATCTCAAATCCTTGGTTTATATGTAAGGAGTGTTCAAGTAATAACACCTCACCAAAATATGGGAAATTTGGATATTAT
GTCACCTGTAAAGATTGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: Orphan Protein; NERD Domain Protein

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MIVKEKTHIKTSNFKQDLGNQVENDVAFYLRRHFSENESIFIYNDLRIEHKGEIAQIDHLVVYKKGFVIIESKSIKGTVQ
INKQLEWQRTVRGKWVGMPSPITQAEMQTKLLKALLNDNAEQLLEKILMLQGYFGGRCWDTLCAASNDAIIDRDNIPSKI
SPMIIKSEQIANRVEEIIASRSSILKPNPTFSDNELQNIKNFLIEAHKNPLIEDKKFTNKFNKPDNITHQTEKK

Sequences:

>Translated_234_residues
MIVKEKTHIKTSNFKQDLGNQVENDVAFYLRRHFSENESIFIYNDLRIEHKGEIAQIDHLVVYKKGFVIIESKSIKGTVQ
INKQLEWQRTVRGKWVGMPSPITQAEMQTKLLKALLNDNAEQLLEKILMLQGYFGGRCWDTLCAASNDAIIDRDNIPSKI
SPMIIKSEQIANRVEEIIASRSSILKPNPTFSDNELQNIKNFLIEAHKNPLIEDKKFTNKFNKPDNITHQTEKK
>Mature_234_residues
MIVKEKTHIKTSNFKQDLGNQVENDVAFYLRRHFSENESIFIYNDLRIEHKGEIAQIDHLVVYKKGFVIIESKSIKGTVQ
INKQLEWQRTVRGKWVGMPSPITQAEMQTKLLKALLNDNAEQLLEKILMLQGYFGGRCWDTLCAASNDAIIDRDNIPSKI
SPMIIKSEQIANRVEEIIASRSSILKPNPTFSDNELQNIKNFLIEAHKNPLIEDKKFTNKFNKPDNITHQTEKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27022; Mature: 27022

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS50965 NERD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVKEKTHIKTSNFKQDLGNQVENDVAFYLRRHFSENESIFIYNDLRIEHKGEIAQIDHL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCHHHHEE
VVYKKGFVIIESKSIKGTVQINKQLEWQRTVRGKWVGMPSPITQAEMQTKLLKALLNDNA
EEEECCEEEEECCCCEEEEEECCCHHHHHHHCEEECCCCCCCHHHHHHHHHHHHHHCCCH
EQLLEKILMLQGYFGGRCWDTLCAASNDAIIDRDNIPSKISPMIIKSEQIANRVEEIIAS
HHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCEECHHHHHHHHHHHHHH
RSSILKPNPTFSDNELQNIKNFLIEAHKNPLIEDKKFTNKFNKPDNITHQTEKK
HHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIVKEKTHIKTSNFKQDLGNQVENDVAFYLRRHFSENESIFIYNDLRIEHKGEIAQIDHL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCHHHHEE
VVYKKGFVIIESKSIKGTVQINKQLEWQRTVRGKWVGMPSPITQAEMQTKLLKALLNDNA
EEEECCEEEEECCCCEEEEEECCCHHHHHHHCEEECCCCCCCHHHHHHHHHHHHHHCCCH
EQLLEKILMLQGYFGGRCWDTLCAASNDAIIDRDNIPSKISPMIIKSEQIANRVEEIIAS
HHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCEECHHHHHHHHHHHHHH
RSSILKPNPTFSDNELQNIKNFLIEAHKNPLIEDKKFTNKFNKPDNITHQTEKK
HHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA