| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is pstS [H]
Identifier: 227080900
GI number: 227080900
Start: 731726
End: 732703
Strand: Direct
Name: pstS [H]
Synonym: VCM66_0679
Alternate gene names: 227080900
Gene position: 731726-732703 (Clockwise)
Preceding gene: 227080899
Following gene: 227080903
Centisome position: 25.3
GC content: 52.56
Gene sequence:
>978_bases ATGAGCCGCATGCTAAGTCGCGTTGGTTGGTTGAGTTCATTGGTTTTGGTTTCATCCACCGCTTGGGCGTTGGATGAAGC GCTGCCACACTATGAAAAAGTCAGCGGTATTTCGGGCAGCCTATTGTCCGTCGGCTCGGATACGCTGGCGGGCATGACTA CGCTGTGGGTGGAGGAGTTTCAAGCCTATTACCCTGCAGTCAATGCGCAAGTGCAAGCCTCGGGTTCGGCAACTGCGCCG CCAGCATTATCAGAAAGCACGGCGCAGTTTGGCCCGATGAGCCGCCCAATGCGCAGCAGTGAAATTGCCGCGTTTGAAGC GATGCACGGCTACAAGCCAACGGCATTGCGTGTGGCGATTGATGCGGTCGGGATTTTTGTGCATCGAGATAATCCGATCA AAGGGCTGAATTTCCAGCAACTGGATGCGATTTTTTCCGCCACATTGCGCTGTGGTGCCACTCAGCCGATTGTCACTTGG TCTCAGCTTGGTCTGCCTTATGATTGGGCAAAGCGCAATATTCAACTGTTTGGTCGCAACTCGGTATCCGGTACCTACGG CTATTTTAAGCAAAACGCGCTGTGCCAAGGGGATTTCCAGAACCGAGTCAATGAGCAGCCGGGCTCGGCTTCGGTGGTGC AGTCGGTTGCCTCTTCAATCAATACGCTCGGTTATTCAGGGGTGGGTTATCGTGTTTCTGGGGTGAAGCTGCTGCCGATT GCGCGTGAAGGGAATGACTATGTTGAGCCAACTCAAGCCAATATTCTGTCGGGAGCCTACCCGTTATCGCGCTATTTGTA TGTGTATGTGAATAAAAATCCTAACCGAGATTTGTCGCCGATTGAGCGCGAATTTATTCGCTTTATGTTTTCACGGCAGG GACAGGCCTTGGTTGCGAAAGATGGCTATTTGCCGATTACGGCGCTGGTGGCAGAGCAAGAGTTAGCCAAAGTTGGCATT AAGCCCATCATCGACTGA
Upstream 100 bases:
>100_bases ACGCGCTTGCACACCATGACACGCATTTGGATATCTACAGTAAAGTCGGTGTCGGCAGTAAGTTTTCGTTTGTTTTACCT AAGCGGTTGGTGGCGAAAGG
Downstream 100 bases:
>100_bases GTGATGAAATGAAAAACGCCCAACTTGAGTTGGGCGTTTTTCATCGAATTGCAGTGACTAGTCTGGCTTAAAACAGCAGT TGCCAGCCGACTTCACGCCA
Product: putative phosphate ABC transporter, periplasmic phosphate-binding protein
Products: NA
Alternate protein names: PBP [H]
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MSRMLSRVGWLSSLVLVSSTAWALDEALPHYEKVSGISGSLLSVGSDTLAGMTTLWVEEFQAYYPAVNAQVQASGSATAP PALSESTAQFGPMSRPMRSSEIAAFEAMHGYKPTALRVAIDAVGIFVHRDNPIKGLNFQQLDAIFSATLRCGATQPIVTW SQLGLPYDWAKRNIQLFGRNSVSGTYGYFKQNALCQGDFQNRVNEQPGSASVVQSVASSINTLGYSGVGYRVSGVKLLPI AREGNDYVEPTQANILSGAYPLSRYLYVYVNKNPNRDLSPIEREFIRFMFSRQGQALVAKDGYLPITALVAEQELAKVGI KPIID
Sequences:
>Translated_325_residues MSRMLSRVGWLSSLVLVSSTAWALDEALPHYEKVSGISGSLLSVGSDTLAGMTTLWVEEFQAYYPAVNAQVQASGSATAP PALSESTAQFGPMSRPMRSSEIAAFEAMHGYKPTALRVAIDAVGIFVHRDNPIKGLNFQQLDAIFSATLRCGATQPIVTW SQLGLPYDWAKRNIQLFGRNSVSGTYGYFKQNALCQGDFQNRVNEQPGSASVVQSVASSINTLGYSGVGYRVSGVKLLPI AREGNDYVEPTQANILSGAYPLSRYLYVYVNKNPNRDLSPIEREFIRFMFSRQGQALVAKDGYLPITALVAEQELAKVGI KPIID >Mature_324_residues SRMLSRVGWLSSLVLVSSTAWALDEALPHYEKVSGISGSLLSVGSDTLAGMTTLWVEEFQAYYPAVNAQVQASGSATAPP ALSESTAQFGPMSRPMRSSEIAAFEAMHGYKPTALRVAIDAVGIFVHRDNPIKGLNFQQLDAIFSATLRCGATQPIVTWS QLGLPYDWAKRNIQLFGRNSVSGTYGYFKQNALCQGDFQNRVNEQPGSASVVQSVASSINTLGYSGVGYRVSGVKLLPIA REGNDYVEPTQANILSGAYPLSRYLYVYVNKNPNRDLSPIEREFIRFMFSRQGQALVAKDGYLPITALVAEQELAKVGIK PIID
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011862 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35376; Mature: 35244
Theoretical pI: Translated: 8.56; Mature: 8.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRMLSRVGWLSSLVLVSSTAWALDEALPHYEKVSGISGSLLSVGSDTLAGMTTLWVEEF CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHH QAYYPAVNAQVQASGSATAPPALSESTAQFGPMSRPMRSSEIAAFEAMHGYKPTALRVAI HHHCCCCCCEEEECCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCCHHEEEEE DAVGIFVHRDNPIKGLNFQQLDAIFSATLRCGATQPIVTWSQLGLPYDWAKRNIQLFGRN EEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEHHHCCCCHHHHCCCEEEEECC SVSGTYGYFKQNALCQGDFQNRVNEQPGSASVVQSVASSINTLGYSGVGYRVSGVKLLPI CCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCEEEEEE AREGNDYVEPTQANILSGAYPLSRYLYVYVNKNPNRDLSPIEREFIRFMFSRQGQALVAK EECCCCCCCCCHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEC DGYLPITALVAEQELAKVGIKPIID CCCCCHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SRMLSRVGWLSSLVLVSSTAWALDEALPHYEKVSGISGSLLSVGSDTLAGMTTLWVEEF HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHH QAYYPAVNAQVQASGSATAPPALSESTAQFGPMSRPMRSSEIAAFEAMHGYKPTALRVAI HHHCCCCCCEEEECCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCCHHEEEEE DAVGIFVHRDNPIKGLNFQQLDAIFSATLRCGATQPIVTWSQLGLPYDWAKRNIQLFGRN EEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEHHHCCCCHHHHCCCEEEEECC SVSGTYGYFKQNALCQGDFQNRVNEQPGSASVVQSVASSINTLGYSGVGYRVSGVKLLPI CCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCEEEEEE AREGNDYVEPTQANILSGAYPLSRYLYVYVNKNPNRDLSPIEREFIRFMFSRQGQALVAK EECCCCCCCCCHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEC DGYLPITALVAEQELAKVGIKPIID CCCCCHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA