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The map label for this gene is slyA [C]

Identifier: 227080830

GI number: 227080830

Start: 650936

End: 651355

Strand: Direct

Name: slyA [C]

Synonym: VCM66_0607

Alternate gene names: 227080830

Gene position: 650936-651355 (Clockwise)

Preceding gene: 227080829

Following gene: 227080831

Centisome position: 22.5

GC content: 45.0

Gene sequence:

>420_bases
GTGTTATCGAATATGCTCGATGTTAATTTAGAAAAAATGGAACGCTTTGCCGCCAAAGTTTGGCGTAAATATGGCAAAGA
AGATCCTCTTGCTCAGCTCAGTTTTAATGAATATGACTACCTGAAAGTGATTCAAAGCGCCCCTCAAGCGATCCGTTTAA
CCGATTTAGCACTGGCGTTAGAAGTGAGTAAGCCCTCTGCCTCTAACATGCTGAAGAGGCTTGAACGGCGAGGTTTAGTG
AAACGCGTTCAGTGCCAATCTGATGCGCGTTCTCAATTGTTTGAGCTGACGGAACAAGCGGAGTTACATCTGGCGAGTGA
AGCTAAGGTTTATCAGATTTTGGCAGAACAAGTCGCGCAGAATTTATCTTCTGAAGAAGCGATGATGCTGGACTTGTTAT
TGGGTAAAGCCCTGCGCTAG

Upstream 100 bases:

>100_bases
CAATGACACAATAGTTTCACCTCTCTCTGATAAAAAAGCCGCATCTTGCGGCTTTTTTTGTTGCTAGGACTCTGGCAGAA
TAGTTAGCCTTGCTAACTAT

Downstream 100 bases:

>100_bases
TCAGGTTTTTATTAGATAGGCTAACTAACTAAATAGATATGTTTGTATGATGAATCGATCGATTTACCGACAGTTTGTTC
GCTACACCATTCCTACGGTG

Product: transcriptional regulator, MarR family

Products: NA

Alternate protein names: Transcriptional Regulator; Regulatory Protein MarR

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MLSNMLDVNLEKMERFAAKVWRKYGKEDPLAQLSFNEYDYLKVIQSAPQAIRLTDLALALEVSKPSASNMLKRLERRGLV
KRVQCQSDARSQLFELTEQAELHLASEAKVYQILAEQVAQNLSSEEAMMLDLLLGKALR

Sequences:

>Translated_139_residues
MLSNMLDVNLEKMERFAAKVWRKYGKEDPLAQLSFNEYDYLKVIQSAPQAIRLTDLALALEVSKPSASNMLKRLERRGLV
KRVQCQSDARSQLFELTEQAELHLASEAKVYQILAEQVAQNLSSEEAMMLDLLLGKALR
>Mature_139_residues
MLSNMLDVNLEKMERFAAKVWRKYGKEDPLAQLSFNEYDYLKVIQSAPQAIRLTDLALALEVSKPSASNMLKRLERRGLV
KRVQCQSDARSQLFELTEQAELHLASEAKVYQILAEQVAQNLSSEEAMMLDLLLGKALR

Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15843; Mature: 15843

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSNMLDVNLEKMERFAAKVWRKYGKEDPLAQLSFNEYDYLKVIQSAPQAIRLTDLALAL
CCCCHHHCCHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
EVSKPSASNMLKRLERRGLVKRVQCQSDARSQLFELTEQAELHLASEAKVYQILAEQVAQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLSSEEAMMLDLLLGKALR
CCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLSNMLDVNLEKMERFAAKVWRKYGKEDPLAQLSFNEYDYLKVIQSAPQAIRLTDLALAL
CCCCHHHCCHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
EVSKPSASNMLKRLERRGLVKRVQCQSDARSQLFELTEQAELHLASEAKVYQILAEQVAQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLSSEEAMMLDLLLGKALR
CCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA