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The map label for this gene is ompU [H]

Identifier: 227080814

GI number: 227080814

Start: 632277

End: 633329

Strand: Reverse

Name: ompU [H]

Synonym: VCM66_0591

Alternate gene names: 227080814

Gene position: 633329-632277 (Counterclockwise)

Preceding gene: 227080816

Following gene: 227080813

Centisome position: 21.9

GC content: 45.96

Gene sequence:

>1053_bases
ATGGACAATAAATTAGGACTTAATAAGATGAACAAGACTCTGATTGCTCTTGCTGTATCAGCTGCTGCAGTGGCTACTGG
CGCTTACGCTGACGGAATCAACCAAAGCGGTGACAAAGCAGGTTCAACCGTTTACAGCGCGAAAGGTACTTCTCTAGAAG
TTGGTGGCCGTGCTGAAGCTCGCCTATCTCTGAAAGATGGTAAGGCACAAGACAACTCTCGCGTACGTCTAAACTTCTTG
GGTAAAGCAGAAATCAATGACAGCCTATACGGTGTTGGTTTCTACGAAGGCGAGTTTACTACTAATGATCAAGGTAAAAA
CGCGTCTAACAACAGCCTAGACAACCGTTATACCTACGCTGGTATCGGTGGCACTTACGGTGAAGTGACTTACGGTAAAA
ACGATGGCGCATTGGGCGTAATCACTGACTTCACCGATATCATGTCTTACCACGGTAACACAGCCGCAGAAAAAATTGCT
GTAGCAGACCGTGTTGACAACATGCTGGCTTACAAAGGCCAATTTGGTGACCTAGGCGTAAAAGCAAGCTACCGTTTTGC
TGACCGTAACGCTGTTGACGCAATGGGTAATGTTGTAACTGAAACAAACGCTGCCAAGTACTCTGACAACGGTGAAGATG
GTTACTCTCTGTCTGCTATCTACACTTTCGGTGACACTGGCTTTAACGTAGGTGCTGGCTACGCAGATCAAGACGATCAA
AACGAATACATGCTAGCCGCTTCTTACCGCATGGAAAACCTGTACTTCGCAGGACTGTTCACTGACGGTGAGCTAGCGAA
AGACGTTGACTACACTGGCTACGAGCTAGCTGCTGGTTACAAACTAGGTCAAGCTGCGTTTACTGCGACATACAACAATG
CAGAAACAGCGAAAGAAACTTCAGCAGATAATTTTGCTATCGACGCAACTTACTACTTCAAGCCAAACTTCCGCTCTTAC
ATCTCTTACCAGTTCAATCTGCTAGATTCAGACAAAGTTGGTAAAGTAGCATCAGAAGACGAACTGGCTATCGGTCTACG
TTACGACTTCTAA

Upstream 100 bases:

>100_bases
AAATCTTTATGCTTTATGGTTGAACACAACAATGACCAATGAAGCTTGATGCATCACCTATTTCGATTGACGTGGCTTAC
GTCGCACAAAAATCAAATTT

Downstream 100 bases:

>100_bases
TTGTTGACTTCAGGTCACACGCCAAACGCCTGCTCACTAGCAGGCGTTTTTCTATCTCGTTATACTGCAGCAACGTTTCT
TGGTGGATGTTATTGCTATG

Product: outer membrane protein OmpU

Products: NA

Alternate protein names: Porin ompU [H]

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MDNKLGLNKMNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKAQDNSRVRLNFL
GKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIGGTYGEVTYGKNDGALGVITDFTDIMSYHGNTAAEKIA
VADRVDNMLAYKGQFGDLGVKASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQDDQ
NEYMLAASYRMENLYFAGLFTDGELAKDVDYTGYELAAGYKLGQAAFTATYNNAETAKETSADNFAIDATYYFKPNFRSY
ISYQFNLLDSDKVGKVASEDELAIGLRYDF

Sequences:

>Translated_350_residues
MDNKLGLNKMNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKAQDNSRVRLNFL
GKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIGGTYGEVTYGKNDGALGVITDFTDIMSYHGNTAAEKIA
VADRVDNMLAYKGQFGDLGVKASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQDDQ
NEYMLAASYRMENLYFAGLFTDGELAKDVDYTGYELAAGYKLGQAAFTATYNNAETAKETSADNFAIDATYYFKPNFRSY
ISYQFNLLDSDKVGKVASEDELAIGLRYDF
>Mature_350_residues
MDNKLGLNKMNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEARLSLKDGKAQDNSRVRLNFL
GKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYAGIGGTYGEVTYGKNDGALGVITDFTDIMSYHGNTAAEKIA
VADRVDNMLAYKGQFGDLGVKASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQDDQ
NEYMLAASYRMENLYFAGLFTDGELAKDVDYTGYELAAGYKLGQAAFTATYNNAETAKETSADNFAIDATYYFKPNFRSY
ISYQFNLLDSDKVGKVASEDELAIGLRYDF

Specific function: Uptake Of Inorganic Phosphate, Phosphorylated Compounds, And Some Other Negatively Charged Solutes. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1786436, Length=379, Percent_Identity=25.5936675461741, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787641, Length=368, Percent_Identity=27.1739130434783, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: 794 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 37659; Mature: 37659

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNKLGLNKMNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEA
CCCCCCCHHHHHEEEEHHHHHHHHHCCHHHCCCCCCCCCCCCEEEECCCCEEEECCCCEE
RLSLKDGKAQDNSRVRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYA
EEEECCCCCCCCCEEEEEEEECEECCCCEEEEEEECCEEECCCCCCCCCCCCCCCCEEEE
GIGGTYGEVTYGKNDGALGVITDFTDIMSYHGNTAAEKIAVADRVDNMLAYKGQFGDLGV
ECCCCCCEEEECCCCCCEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCCCCCCE
KASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQDDQ
EEEEEECCCCHHHHHCCEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC
NEYMLAASYRMENLYFAGLFTDGELAKDVDYTGYELAAGYKLGQAAFTATYNNAETAKET
CCEEEEEEEEECEEEEEEEECCCCHHCCCCCCCEEEECCCEECCEEEEEEECCCHHHHHC
SADNFAIDATYYFKPNFRSYISYQFNLLDSDKVGKVASEDELAIGLRYDF
CCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MDNKLGLNKMNKTLIALAVSAAAVATGAYADGINQSGDKAGSTVYSAKGTSLEVGGRAEA
CCCCCCCHHHHHEEEEHHHHHHHHHCCHHHCCCCCCCCCCCCEEEECCCCEEEECCCCEE
RLSLKDGKAQDNSRVRLNFLGKAEINDSLYGVGFYEGEFTTNDQGKNASNNSLDNRYTYA
EEEECCCCCCCCCEEEEEEEECEECCCCEEEEEEECCEEECCCCCCCCCCCCCCCCEEEE
GIGGTYGEVTYGKNDGALGVITDFTDIMSYHGNTAAEKIAVADRVDNMLAYKGQFGDLGV
ECCCCCCEEEECCCCCCEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCCCCCCE
KASYRFADRNAVDAMGNVVTETNAAKYSDNGEDGYSLSAIYTFGDTGFNVGAGYADQDDQ
EEEEEECCCCHHHHHCCEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC
NEYMLAASYRMENLYFAGLFTDGELAKDVDYTGYELAAGYKLGQAAFTATYNNAETAKET
CCEEEEEEEEECEEEEEEEECCCCHHCCCCCCCEEEECCCEECCEEEEEEECCCHHHHHC
SADNFAIDATYYFKPNFRSYISYQFNLLDSDKVGKVASEDELAIGLRYDF
CCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8945596 [H]