| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is recX [H]
Identifier: 227080727
GI number: 227080727
Start: 533340
End: 533798
Strand: Direct
Name: recX [H]
Synonym: VCM66_0502
Alternate gene names: 227080727
Gene position: 533340-533798 (Clockwise)
Preceding gene: 227080726
Following gene: 227080728
Centisome position: 18.44
GC content: 47.71
Gene sequence:
>459_bases ATGAGTTTCGACTTAGCCACTTGCCGACAAAGTGCCTTACAACTTCTGAGCCGTCGCGATCATAGCGAATATGAGCTATA CCAAAAATTAGCCCTCAAAGGTCATCCTGCTGAAGTGATTGATGAGGTTGTGAAGTACGTTTTAGAGCTAGGGTATTTGA GTGATGCCCGTTACGCAGCGAGTCAGGCTCGACAAATCGTTCATAAAGGTTACGGTGAGCAGCGTTTGCGCCAGCAACTC AAAGAAAAGCGGGTTGCGGAAGAGGTGATTGAGCAAGCCCTCGCCGAGCAAACGATAGATTGGTTTGAACTAGCGAAAGA GGTCGCACACAAGAAATTCAAAAGCGGCATCAGCCACGAGCGCTCGCAATACGCCAAACAAGTTCGGTACTTACAGTACC GTGGTTTCAACTTTGAGCAAATTCGTTATGCGCTTCAAGCCAGTGAGAGTGATGAGTAA
Upstream 100 bases:
>100_bases TCAATCTCGATGTTGATGAAGCCCTGCAATGCAGGGCTTCTTTTTGGCTGCCAATTGAGTGAGTGACTCAAAACTCACCG TTAGCCTAATAGGGAGTTCC
Downstream 100 bases:
>100_bases TCGCTTTCACCCTCTACATTCCGCTTATTAATCTCGCTCTGGATTTTATGCATCTTGGTTGAGCTGCCGCTCGCCACACA TTCAGTTTGCGGAAGAGAAG
Product: recombination regulator RecX
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MSFDLATCRQSALQLLSRRDHSEYELYQKLALKGHPAEVIDEVVKYVLELGYLSDARYAASQARQIVHKGYGEQRLRQQL KEKRVAEEVIEQALAEQTIDWFELAKEVAHKKFKSGISHERSQYAKQVRYLQYRGFNFEQIRYALQASESDE
Sequences:
>Translated_152_residues MSFDLATCRQSALQLLSRRDHSEYELYQKLALKGHPAEVIDEVVKYVLELGYLSDARYAASQARQIVHKGYGEQRLRQQL KEKRVAEEVIEQALAEQTIDWFELAKEVAHKKFKSGISHERSQYAKQVRYLQYRGFNFEQIRYALQASESDE >Mature_151_residues SFDLATCRQSALQLLSRRDHSEYELYQKLALKGHPAEVIDEVVKYVLELGYLSDARYAASQARQIVHKGYGEQRLRQQLK EKRVAEEVIEQALAEQTIDWFELAKEVAHKKFKSGISHERSQYAKQVRYLQYRGFNFEQIRYALQASESDE
Specific function: Modulates recA activity [H]
COG id: COG2137
COG function: function code R; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the recX family [H]
Homologues:
Organism=Escherichia coli, GI1789050, Length=140, Percent_Identity=37.1428571428571, Blast_Score=86, Evalue=1e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003783 [H]
Pfam domain/function: PF02631 RecX [H]
EC number: NA
Molecular weight: Translated: 17816; Mature: 17685
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFDLATCRQSALQLLSRRDHSEYELYQKLALKGHPAEVIDEVVKYVLELGYLSDARYAA CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH SQARQIVHKGYGEQRLRQQLKEKRVAEEVIEQALAEQTIDWFELAKEVAHKKFKSGISHE HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH RSQYAKQVRYLQYRGFNFEQIRYALQASESDE HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC >Mature Secondary Structure SFDLATCRQSALQLLSRRDHSEYELYQKLALKGHPAEVIDEVVKYVLELGYLSDARYAA CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH SQARQIVHKGYGEQRLRQQLKEKRVAEEVIEQALAEQTIDWFELAKEVAHKKFKSGISHE HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH RSQYAKQVRYLQYRGFNFEQIRYALQASESDE HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA