Click here to switch to the map view.

The map label for this gene is mshC

Identifier: 227080621

GI number: 227080621

Start: 420749

End: 421237

Strand: Direct

Name: mshC

Synonym: VCM66_0395

Alternate gene names: NA

Gene position: 420749-421237 (Clockwise)

Preceding gene: 227080620

Following gene: 227080622

Centisome position: 14.55

GC content: 50.51

Gene sequence:

>489_bases
ATGAAAATTATAGGTAAAGGTTTTACCCTTATTGAACTGGTAGTGGTGATTATCCTACTAGGGATACTCTCTGCTTATGC
GGCAAGCCGATTTTTGGGGCCTTCCTCCTTTGCGGTGGTAACCACGCAGAGTGAAATATTAGCCTCACTGCGGTTAACCC
AAAGCCGCGCGATGCAGCGTACGGGGTATTGTAATCGTTGGCTTTTGACCAGCAACGCCGCCATTCAAGTTTCTCCGCAG
GCTATGCAAGGCAGTTGTCTTAGCGTTTTTCCCAGTAACCCTACCGATCCTTCGTGGGTGGATGCCGCCGTCAGTGGTGT
GGCGCTTTCCTTGGCGGGTTCGGGTGGGGCTTCTTTTCTTGATTTCGATAGTTTAGGCCGTGCTACGCAATGTATCAGTG
CTGGGTGCACGGTGAGCATCAGCAGTTCGACGCACAATGAGGTTCGCCAAGTCTGCATCAATACCGAAGGGTATATCTAT
GCCTGTTAA

Upstream 100 bases:

>100_bases
TCCTGCAACGGTTGCTATGCAGACTGGGGTTGCTGGAACTGCTTGTGGTAAACCAGCGCAATAATTTAAATATGGCTCGT
GCATGTAACGAGCCTATTTT

Downstream 100 bases:

>100_bases
GCCGATGATTGCTAAGCGTGGTTTTACCTTGGTTGAGATGATCATCGTGATTGTGGTGTTGGGCGTTGCACTGGTCGGCG
TAACCACCTCGTTATATCCA

Product: MSHA pilin protein MshC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MKIIGKGFTLIELVVVIILLGILSAYAASRFLGPSSFAVVTTQSEILASLRLTQSRAMQRTGYCNRWLLTSNAAIQVSPQ
AMQGSCLSVFPSNPTDPSWVDAAVSGVALSLAGSGGASFLDFDSLGRATQCISAGCTVSISSSTHNEVRQVCINTEGYIY
AC

Sequences:

>Translated_162_residues
MKIIGKGFTLIELVVVIILLGILSAYAASRFLGPSSFAVVTTQSEILASLRLTQSRAMQRTGYCNRWLLTSNAAIQVSPQ
AMQGSCLSVFPSNPTDPSWVDAAVSGVALSLAGSGGASFLDFDSLGRATQCISAGCTVSISSSTHNEVRQVCINTEGYIY
AC
>Mature_162_residues
MKIIGKGFTLIELVVVIILLGILSAYAASRFLGPSSFAVVTTQSEILASLRLTQSRAMQRTGYCNRWLLTSNAAIQVSPQ
AMQGSCLSVFPSNPTDPSWVDAAVSGVALSLAGSGGASFLDFDSLGRATQCISAGCTVSISSSTHNEVRQVCINTEGYIY
AC

Specific function: Unknown

COG id: COG2165

COG function: function code NU; Type II secretory pathway, pseudopilin PulG

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17006; Mature: 17006

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIIGKGFTLIELVVVIILLGILSAYAASRFLGPSSFAVVTTQSEILASLRLTQSRAMQR
CCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH
TGYCNRWLLTSNAAIQVSPQAMQGSCLSVFPSNPTDPSWVDAAVSGVALSLAGSGGASFL
CCCCCEEEEECCCEEEECCHHHCCCEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCEE
DFDSLGRATQCISAGCTVSISSSTHNEVRQVCINTEGYIYAC
CHHHCCHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCEEEEC
>Mature Secondary Structure
MKIIGKGFTLIELVVVIILLGILSAYAASRFLGPSSFAVVTTQSEILASLRLTQSRAMQR
CCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH
TGYCNRWLLTSNAAIQVSPQAMQGSCLSVFPSNPTDPSWVDAAVSGVALSLAGSGGASFL
CCCCCEEEEECCCEEEECCHHHCCCEEEECCCCCCCCHHHHHHHHHEEEEEECCCCCCEE
DFDSLGRATQCISAGCTVSISSSTHNEVRQVCINTEGYIYAC
CHHHCCHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA