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The map label for this gene is mshD

Identifier: 227080622

GI number: 227080622

Start: 421185

End: 421796

Strand: Direct

Name: mshD

Synonym: VCM66_0396

Alternate gene names: NA

Gene position: 421185-421796 (Clockwise)

Preceding gene: 227080621

Following gene: 227080623

Centisome position: 14.56

GC content: 47.39

Gene sequence:

>612_bases
ATGAGGTTCGCCAAGTCTGCATCAATACCGAAGGGTATATCTATGCCTGTTAAGCCGATGATTGCTAAGCGTGGTTTTAC
CTTGGTTGAGATGATCATCGTGATTGTGGTGTTGGGCGTTGCACTGGTCGGCGTAACCACCTCGTTATATCCACGCTCCA
AACAGAGTGCTGAGCAAGTGTTATCGGTGAAAGCCGCAGAATTGGGGCGGGCAGTACTGGATGAAGTTTTGGGGCGTGCT
TTTGATCAACACTCAGGCCCGAATGGTGGCTTACCTGAATGTGTGATTACGGAAACGGCTGGACGTACGCTTTGCAGTGC
ACCATCCGCGTTAGGTAAAGATACAGGTGAATCCAATAACACAGAATTCAACGATGTGGATGATTACATCACATCAAGCC
CAATACCCGTCACTGATGTGCTGGGTACGGATATTTCCTCTGAATACCAACGCTTTAGCGTATCGATACAAGTGTTTTAT
GTATCAGATAATGGCGGTCAATTTTCGGCAACGCCTGCTACAGAGCGAACCCACTACAAACGTATTGCATTAGTGATTTA
CGATCCGCAAGGTAATGCGTATCCGTTTGCTGCGATTAAGGGGAACTACTGA

Upstream 100 bases:

>100_bases
GGTTCGGGTGGGGCTTCTTTTCTTGATTTCGATAGTTTAGGCCGTGCTACGCAATGTATCAGTGCTGGGTGCACGGTGAG
CATCAGCAGTTCGACGCACA

Downstream 100 bases:

>100_bases
TGAGCCGTGGTTTCACCCTAATCGAAATGGTGATCACTATTATCTTGCTTGGCATTGTTGGCTTATTTCTGGGCAATATT
GCTGGGCAAGCGATGGGGAT

Product: MSHA pilin protein MshD

Products: NA

Alternate protein names: Methylation Site Containing Protein; MshD Protein; Mannose-Sensitive Agglutinin; Pilin Protein; Type IV Pilus Prepilin-Like Protein

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MRFAKSASIPKGISMPVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVLDEVLGRA
FDQHSGPNGGLPECVITETAGRTLCSAPSALGKDTGESNNTEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVFY
VSDNGGQFSATPATERTHYKRIALVIYDPQGNAYPFAAIKGNY

Sequences:

>Translated_203_residues
MRFAKSASIPKGISMPVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVLDEVLGRA
FDQHSGPNGGLPECVITETAGRTLCSAPSALGKDTGESNNTEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVFY
VSDNGGQFSATPATERTHYKRIALVIYDPQGNAYPFAAIKGNY
>Mature_203_residues
MRFAKSASIPKGISMPVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVLDEVLGRA
FDQHSGPNGGLPECVITETAGRTLCSAPSALGKDTGESNNTEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVFY
VSDNGGQFSATPATERTHYKRIALVIYDPQGNAYPFAAIKGNY

Specific function: Unknown

COG id: COG2165

COG function: function code NU; Type II secretory pathway, pseudopilin PulG

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21726; Mature: 21726

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFAKSASIPKGISMPVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQV
CCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LSVKAAELGRAVLDEVLGRAFDQHSGPNGGLPECVITETAGRTLCSAPSALGKDTGESNN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHCCCHHHCCCCCCCCC
TEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVFYVSDNGGQFSATPATERTHYK
CCCCCHHHHHCCCCCCHHHHHCCCHHHHHEEEEEEEEEEEEECCCCEEECCCCCCCCCEE
RIALVIYDPQGNAYPFAAIKGNY
EEEEEEECCCCCEEEEEEECCCC
>Mature Secondary Structure
MRFAKSASIPKGISMPVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQV
CCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LSVKAAELGRAVLDEVLGRAFDQHSGPNGGLPECVITETAGRTLCSAPSALGKDTGESNN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHCCCHHHCCCCCCCCC
TEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVFYVSDNGGQFSATPATERTHYK
CCCCCHHHHHCCCCCCHHHHHCCCHHHHHEEEEEEEEEEEEECCCCEEECCCCCCCCCEE
RIALVIYDPQGNAYPFAAIKGNY
EEEEEEECCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA