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The map label for this gene is yicC [H]

Identifier: 227080430

GI number: 227080430

Start: 202543

End: 203409

Strand: Reverse

Name: yicC [H]

Synonym: VCM66_0197

Alternate gene names: 227080430

Gene position: 203409-202543 (Counterclockwise)

Preceding gene: 227080433

Following gene: 227080429

Centisome position: 7.03

GC content: 52.13

Gene sequence:

>867_bases
ATGATTTACAGCATGACTGCGTACGCACGCAAAGAAGTCAAAGGCGATTGGGGCAGCGCCGTGTGGGAAATTCGCTCGGT
TAACCAACGCTATTTAGAAACGTACTTCCGCCTGCCTGAGCAGTTCCGTGGTTTAGAGCCACTGCTGCGCGAGCGTTTTC
GTCAGCGCCTGTCACGCGGTAAGATCGAGTGTCATTTGCGCTTTGAAGCGAATCCAGCCGCGCAAAGCCACCTCACCATC
AATGAAGGACTCGCCCAGCAAGTGATTAATGCCGCTAACCAGATCATGCACATGACCGGTGAACTCAGCCGCATTAACCC
ATTCCAAGTGATGCAGTGGCCGGGCGTGATGGAAACGCCTGAGCAGGATATGGACGCCATAAACCAAGCACTACTCAGTG
CGTTTGATGAAGGCGTGGACGAATTTATCGCCGCGCGTGGCCGTGAAGGCGATAACATGAAAGCGCTGATTGAGCAGCGT
TTGCAAGCGATCAGCGCCGAAGTGGTCAAAGTACGCGCACGCATGCCAGAAATTCTGGAATGGCAACGCGAGCGTCTGTT
CAGCAAATTTGAAGAGGCAAAAATCGAGCTTGATGCGAGCCGCGTAGAGCAAGAGCTGATCCTGCTGGCACAAAAATCGG
ATGTAGCCGAAGAGCTGGATCGTCTCGACTCTCATGTCAAAGAAGCGCGTGAAGTGCTGAAAAAAGGTGGCTCATGTGGC
CGTAAACTCGATTTCATGATGCAAGAGTTCAACCGTGAATCGAACACCTTGGCTTCGAAATCCATCTCAACCGATATCAC
CGCCTCCGGTGTGGAGCTGAAAGTACTCATCGAGCAGATGAGAGAGCAGATCCAAAACATCGAATAA

Upstream 100 bases:

>100_bases
TACAGGCGCTAGGTTAACGAATTCAGCACGGTAGCGCCGTTTTGCCTGCTTTGCTACTATTAGCGCCAGTCACAAAGAGA
TGAAAGCAAAGGACATCCTG

Downstream 100 bases:

>100_bases
CCCTTAAAGCCTCGTTGATTCGGGGCTTTTATTTAATCCCCTAACTTCTTAGTAATTGGAAACCTATGGAACGTTTGATC
GAAAAACTTCTCTATTCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MIYSMTAYARKEVKGDWGSAVWEIRSVNQRYLETYFRLPEQFRGLEPLLRERFRQRLSRGKIECHLRFEANPAAQSHLTI
NEGLAQQVINAANQIMHMTGELSRINPFQVMQWPGVMETPEQDMDAINQALLSAFDEGVDEFIAARGREGDNMKALIEQR
LQAISAEVVKVRARMPEILEWQRERLFSKFEEAKIELDASRVEQELILLAQKSDVAEELDRLDSHVKEAREVLKKGGSCG
RKLDFMMQEFNRESNTLASKSISTDITASGVELKVLIEQMREQIQNIE

Sequences:

>Translated_288_residues
MIYSMTAYARKEVKGDWGSAVWEIRSVNQRYLETYFRLPEQFRGLEPLLRERFRQRLSRGKIECHLRFEANPAAQSHLTI
NEGLAQQVINAANQIMHMTGELSRINPFQVMQWPGVMETPEQDMDAINQALLSAFDEGVDEFIAARGREGDNMKALIEQR
LQAISAEVVKVRARMPEILEWQRERLFSKFEEAKIELDASRVEQELILLAQKSDVAEELDRLDSHVKEAREVLKKGGSCG
RKLDFMMQEFNRESNTLASKSISTDITASGVELKVLIEQMREQIQNIE
>Mature_288_residues
MIYSMTAYARKEVKGDWGSAVWEIRSVNQRYLETYFRLPEQFRGLEPLLRERFRQRLSRGKIECHLRFEANPAAQSHLTI
NEGLAQQVINAANQIMHMTGELSRINPFQVMQWPGVMETPEQDMDAINQALLSAFDEGVDEFIAARGREGDNMKALIEQR
LQAISAEVVKVRARMPEILEWQRERLFSKFEEAKIELDASRVEQELILLAQKSDVAEELDRLDSHVKEAREVLKKGGSCG
RKLDFMMQEFNRESNTLASKSISTDITASGVELKVLIEQMREQIQNIE

Specific function: Unknown

COG id: COG1561

COG function: function code S; Uncharacterized stress-induced protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0701 family [H]

Homologues:

Organism=Escherichia coli, GI1790075, Length=288, Percent_Identity=64.5833333333333, Blast_Score=382, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005229
- InterPro:   IPR013551
- InterPro:   IPR013527 [H]

Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N [H]

EC number: NA

Molecular weight: Translated: 33204; Mature: 33204

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYSMTAYARKEVKGDWGSAVWEIRSVNQRYLETYFRLPEQFRGLEPLLRERFRQRLSRG
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHCC
KIECHLRFEANPAAQSHLTINEGLAQQVINAANQIMHMTGELSRINPFQVMQWPGVMETP
CEEEEEEECCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCC
EQDMDAINQALLSAFDEGVDEFIAARGREGDNMKALIEQRLQAISAEVVKVRARMPEILE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH
WQRERLFSKFEEAKIELDASRVEQELILLAQKSDVAEELDRLDSHVKEAREVLKKGGSCG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RKLDFMMQEFNRESNTLASKSISTDITASGVELKVLIEQMREQIQNIE
HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIYSMTAYARKEVKGDWGSAVWEIRSVNQRYLETYFRLPEQFRGLEPLLRERFRQRLSRG
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHCC
KIECHLRFEANPAAQSHLTINEGLAQQVINAANQIMHMTGELSRINPFQVMQWPGVMETP
CEEEEEEECCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCC
EQDMDAINQALLSAFDEGVDEFIAARGREGDNMKALIEQRLQAISAEVVKVRARMPEILE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH
WQRERLFSKFEEAKIELDASRVEQELILLAQKSDVAEELDRLDSHVKEAREVLKKGGSCG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RKLDFMMQEFNRESNTLASKSISTDITASGVELKVLIEQMREQIQNIE
HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2664418; 7686882; 9278503; 1925027 [H]