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The map label for this gene is secY [H]

Identifier: 226950913

GI number: 226950913

Start: 3964965

End: 3966242

Strand: Reverse

Name: secY [H]

Synonym: CLM_3928

Alternate gene names: 226950913

Gene position: 3966242-3964965 (Counterclockwise)

Preceding gene: 226950914

Following gene: 226950912

Centisome position: 95.45

GC content: 31.53

Gene sequence:

>1278_bases
ATGCTATCAACCCTACGTAATGCTTGGAAAGTTCCCGATTTAAGGAAAAGATTAATTTTTACTTTATTTATGATAGCAAT
TTTCAGGATGGGAAACTATATCCCAGTTCCTGGAATTGATACATCTAAATTAGCTAACCTCACGCAAAATGGATCATTAT
TTGGATTTTATGATTTAATATCTGGAGGAGCTTTTAGCAGGTTTAGTATATTTGCTATGGGTGTTGTACCGTATATTAAC
TCTTCAATTATAATGCAGTTACTTACAATTGCGTTACCTTCTTTGGAAAGTCTTTCAAAAGAGGGAGAAGAGGGAAGAAA
AAAAATTCAACAATATACTAGGTATGGTGCAGTTATACTTGCGGTTATTCAAGCATTCAGTACATATGCGATAATTGCTC
GTGCTGGGGCACTTAGAGATGGATCAAAGTTAAATTTATTCATAATTATAATAACAGTGACTACTGCATCAACCTTTTTA
ATGTGGTTCGGTGATAAAATAACAGAAAAAGGTATAGGTAACGGAATATCATTAATAATATTTGTTAACATAGTATCTAG
ATTTCCATCAACTATATATAGTATAGTAGGACTTCAAAAGGCTGAAACAGTAAATTTTGTGGAAGTTATAGTGTTTATAG
TAATAGCCTTAGCATTGTTCTTATTAGTTGTAATAATGAATTTAGGTGAGAGAAGAATACCTGTCCAATATGCTGGAAGA
GCAGTAGGAAATAAAATTTATAAAGGTCAATCTACACACATACCAATAAATGTTAATTCTTCTGCGGTTATAGGTATTAT
ATTTGCTATATCAGTAATGCAATTTCCAATTACTATTGGTCAATTTTGGCCAGAATCGGCTTTTTATAAGTTTATTACCT
TAAATCAATATAGCCCTTTTAGAGATAAAAGTATTGCTTATATTGTGTTATATTTTCTATTAACAGTATTCTTTACTTGG
TTTTATACAGTGGTAACTTTTAAACCTGATGAAATGGCAGAAAATATGCATAAGTCATCTGGATTTATACCAGGAATAAG
ACCAGGGGAGCCTACAGCAGAATATATAGAAAGAGTAATAACAAAGAGTTCTATAATTGGGGGAACTTTTGCAGCTATTA
TAGCAGTATTCCCAATAATTATGGCAGCATATAGTAAATTCCAAGGTATATCCTTTGGGGGAACAAGTATGCTAATTATG
GTTGGATTTGCATTGGATACTATAAGACAAATAGAATCTCAATTAGTTATGCGTCACTATCAAGGTTTCTTAAAATAA

Upstream 100 bases:

>100_bases
TGGTAATATAGAAAAAAAATTAACTGTTAAAGCAGCAAAATTCTCTAAATCAGCTATTGAAAAGATCGAAGCAGCAGGAG
GAAAAGTTGAGGTGATATAA

Downstream 100 bases:

>100_bases
AAATGTTTTGGAGATGATTATGGATGCGTATAATTTTGTTAGGTCCTCCAGGAGCAGGTAAAGGAACTCAAGCAAAATTA
ATAAGTGAAGAATTTTCTAT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MLSTLRNAWKVPDLRKRLIFTLFMIAIFRMGNYIPVPGIDTSKLANLTQNGSLFGFYDLISGGAFSRFSIFAMGVVPYIN
SSIIMQLLTIALPSLESLSKEGEEGRKKIQQYTRYGAVILAVIQAFSTYAIIARAGALRDGSKLNLFIIIITVTTASTFL
MWFGDKITEKGIGNGISLIIFVNIVSRFPSTIYSIVGLQKAETVNFVEVIVFIVIALALFLLVVIMNLGERRIPVQYAGR
AVGNKIYKGQSTHIPINVNSSAVIGIIFAISVMQFPITIGQFWPESAFYKFITLNQYSPFRDKSIAYIVLYFLLTVFFTW
FYTVVTFKPDEMAENMHKSSGFIPGIRPGEPTAEYIERVITKSSIIGGTFAAIIAVFPIIMAAYSKFQGISFGGTSMLIM
VGFALDTIRQIESQLVMRHYQGFLK

Sequences:

>Translated_425_residues
MLSTLRNAWKVPDLRKRLIFTLFMIAIFRMGNYIPVPGIDTSKLANLTQNGSLFGFYDLISGGAFSRFSIFAMGVVPYIN
SSIIMQLLTIALPSLESLSKEGEEGRKKIQQYTRYGAVILAVIQAFSTYAIIARAGALRDGSKLNLFIIIITVTTASTFL
MWFGDKITEKGIGNGISLIIFVNIVSRFPSTIYSIVGLQKAETVNFVEVIVFIVIALALFLLVVIMNLGERRIPVQYAGR
AVGNKIYKGQSTHIPINVNSSAVIGIIFAISVMQFPITIGQFWPESAFYKFITLNQYSPFRDKSIAYIVLYFLLTVFFTW
FYTVVTFKPDEMAENMHKSSGFIPGIRPGEPTAEYIERVITKSSIIGGTFAAIIAVFPIIMAAYSKFQGISFGGTSMLIM
VGFALDTIRQIESQLVMRHYQGFLK
>Mature_425_residues
MLSTLRNAWKVPDLRKRLIFTLFMIAIFRMGNYIPVPGIDTSKLANLTQNGSLFGFYDLISGGAFSRFSIFAMGVVPYIN
SSIIMQLLTIALPSLESLSKEGEEGRKKIQQYTRYGAVILAVIQAFSTYAIIARAGALRDGSKLNLFIIIITVTTASTFL
MWFGDKITEKGIGNGISLIIFVNIVSRFPSTIYSIVGLQKAETVNFVEVIVFIVIALALFLLVVIMNLGERRIPVQYAGR
AVGNKIYKGQSTHIPINVNSSAVIGIIFAISVMQFPITIGQFWPESAFYKFITLNQYSPFRDKSIAYIVLYFLLTVFFTW
FYTVVTFKPDEMAENMHKSSGFIPGIRPGEPTAEYIERVITKSSIIGGTFAAIIAVFPIIMAAYSKFQGISFGGTSMLIM
VGFALDTIRQIESQLVMRHYQGFLK

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=421, Percent_Identity=39.1923990498812, Blast_Score=277, Evalue=1e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47315; Mature: 47315

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSTLRNAWKVPDLRKRLIFTLFMIAIFRMGNYIPVPGIDTSKLANLTQNGSLFGFYDLI
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEHHHHH
SGGAFSRFSIFAMGVVPYINSSIIMQLLTIALPSLESLSKEGEEGRKKIQQYTRYGAVIL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHH
AVIQAFSTYAIIARAGALRDGSKLNLFIIIITVTTASTFLMWFGDKITEKGIGNGISLII
HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHH
FVNIVSRFPSTIYSIVGLQKAETVNFVEVIVFIVIALALFLLVVIMNLGERRIPVQYAGR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
AVGNKIYKGQSTHIPINVNSSAVIGIIFAISVMQFPITIGQFWPESAFYKFITLNQYSPF
HHCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCCC
RDKSIAYIVLYFLLTVFFTWFYTVVTFKPDEMAENMHKSSGFIPGIRPGEPTAEYIERVI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
TKSSIIGGTFAAIIAVFPIIMAAYSKFQGISFGGTSMLIMVGFALDTIRQIESQLVMRHY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QGFLK
HHHCC
>Mature Secondary Structure
MLSTLRNAWKVPDLRKRLIFTLFMIAIFRMGNYIPVPGIDTSKLANLTQNGSLFGFYDLI
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEHHHHH
SGGAFSRFSIFAMGVVPYINSSIIMQLLTIALPSLESLSKEGEEGRKKIQQYTRYGAVIL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHH
AVIQAFSTYAIIARAGALRDGSKLNLFIIIITVTTASTFLMWFGDKITEKGIGNGISLII
HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHH
FVNIVSRFPSTIYSIVGLQKAETVNFVEVIVFIVIALALFLLVVIMNLGERRIPVQYAGR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
AVGNKIYKGQSTHIPINVNSSAVIGIIFAISVMQFPITIGQFWPESAFYKFITLNQYSPF
HHCCHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCCCC
RDKSIAYIVLYFLLTVFFTWFYTVVTFKPDEMAENMHKSSGFIPGIRPGEPTAEYIERVI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
TKSSIIGGTFAAIIAVFPIIMAAYSKFQGISFGGTSMLIMVGFALDTIRQIESQLVMRHY
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QGFLK
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA