Click here to switch to the map view.

The map label for this gene is yjiM [H]

Identifier: 226950673

GI number: 226950673

Start: 3696294

End: 3697442

Strand: Reverse

Name: yjiM [H]

Synonym: CLM_3658

Alternate gene names: 226950673

Gene position: 3697442-3696294 (Counterclockwise)

Preceding gene: 226950674

Following gene: 226950672

Centisome position: 88.98

GC content: 29.94

Gene sequence:

>1149_bases
ATGAATAAATTACCAGATTTTATTAAGGATTTTAGTGAAGCTAAAAGAAATTCATTTGTAAAAATGAAGGAAATTAAAGA
TGAAGGTGGAAAAATAGTGGGAGTTTATTGTGGATTTGCTCCCTGGGAAGTTATAGCTGCATCAGGAGCAGTGGGGGCTT
GGCTTTGTGGAATGGATGAGGAACCTATAGAGGATGCAGAAAAACATTTGCCAAGAAATTTATGCCCACTAATAAAATCA
AGTTATGGTTTTGCATTAACAGAAAAATGCCCATTTTATTATTTTTCAGATATGCTTTTAGGAGAAACTACTTGTGATGG
GAAAAAGAAAATGTATGAAGCATTAAGTAAAATGAAACCTATGCATGTTATGAATATACCCCAAACACCTTATGGAAAGG
ATTCCTATAATTATTACAAGAAAGCAATTATAAAGCTTAAAGAGGAATTAGAAAAGAATTTGAATGTAGAAATTACGGAA
GAAAAGTTAAAAGAAAAAATTAAATTAAGAAATAGAGAAAGAACGGCTTTAAGAGATTATTATAGCTTATCTAAACTTTG
TCCACCACCTATGACAGGTTATAATTTGAGAAGGGTAATACAGGGAACCTTATATTTATCAGATAAGGAAAAGGAAATAG
AGGATATAAATAATATAATAAGAGAAACAATGAAAAAATATAATGAAGGTGAAAGGCCCGTTTCTAAAGAGGCTAAAAGA
ATACTTGTAACAGGTTGTCCTCTAGGAGATTCTACTGAAAAAGTAATTGAGGCTATAGAAGATAATGGAGGAGTAGTAGT
TTGTTATGAAAATTGTAGTGGTGCAAAAGATGAAAGTTTATTAGTAGATGAAGAAAAAAATCCAATAGATGCATTAACAG
AAAGATATTTAAGAACAGCCTGTGCTTGTATGAGTCCTAATGATAATAGAATAGAATATTTAGATTATTTAATAGATGAA
TATAGGGTGGAAGGTGTAGTGGAAGTTATATTGCAAGCATGTCATACCTATAATGTAGAGTCTCATAGAATAAAAACTTT
TGTTACAAATAATAAAAAAGTACCTTATTTAAAAATAGAAACAGATTATTCTAAAAGGGATTTAGGACAACTAAAAACTA
GAGTAGAGGCTTTTATAGAAATGTTATAA

Upstream 100 bases:

>100_bases
AAAGGGTGTCTCAAAATGAAATAGATTTAATTTTAAAATCGCAAATATAAAATTAAATCTATTTTGAGGCATCCTATTTT
TATCTAGAGGGGGATATTAT

Downstream 100 bases:

>100_bases
TATGAAAATTAAATTTGTATAAAAAAATATAATAAGTATAACTGTAACCATTACATATTCAAATAACTTGCTATATATTA
ACTATGGTAAAATTGATATG

Product: 2-hydroxyglutaryl-CoA dehydratase subunit D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MNKLPDFIKDFSEAKRNSFVKMKEIKDEGGKIVGVYCGFAPWEVIAASGAVGAWLCGMDEEPIEDAEKHLPRNLCPLIKS
SYGFALTEKCPFYYFSDMLLGETTCDGKKKMYEALSKMKPMHVMNIPQTPYGKDSYNYYKKAIIKLKEELEKNLNVEITE
EKLKEKIKLRNRERTALRDYYSLSKLCPPPMTGYNLRRVIQGTLYLSDKEKEIEDINNIIRETMKKYNEGERPVSKEAKR
ILVTGCPLGDSTEKVIEAIEDNGGVVVCYENCSGAKDESLLVDEEKNPIDALTERYLRTACACMSPNDNRIEYLDYLIDE
YRVEGVVEVILQACHTYNVESHRIKTFVTNNKKVPYLKIETDYSKRDLGQLKTRVEAFIEML

Sequences:

>Translated_382_residues
MNKLPDFIKDFSEAKRNSFVKMKEIKDEGGKIVGVYCGFAPWEVIAASGAVGAWLCGMDEEPIEDAEKHLPRNLCPLIKS
SYGFALTEKCPFYYFSDMLLGETTCDGKKKMYEALSKMKPMHVMNIPQTPYGKDSYNYYKKAIIKLKEELEKNLNVEITE
EKLKEKIKLRNRERTALRDYYSLSKLCPPPMTGYNLRRVIQGTLYLSDKEKEIEDINNIIRETMKKYNEGERPVSKEAKR
ILVTGCPLGDSTEKVIEAIEDNGGVVVCYENCSGAKDESLLVDEEKNPIDALTERYLRTACACMSPNDNRIEYLDYLIDE
YRVEGVVEVILQACHTYNVESHRIKTFVTNNKKVPYLKIETDYSKRDLGQLKTRVEAFIEML
>Mature_382_residues
MNKLPDFIKDFSEAKRNSFVKMKEIKDEGGKIVGVYCGFAPWEVIAASGAVGAWLCGMDEEPIEDAEKHLPRNLCPLIKS
SYGFALTEKCPFYYFSDMLLGETTCDGKKKMYEALSKMKPMHVMNIPQTPYGKDSYNYYKKAIIKLKEELEKNLNVEITE
EKLKEKIKLRNRERTALRDYYSLSKLCPPPMTGYNLRRVIQGTLYLSDKEKEIEDINNIIRETMKKYNEGERPVSKEAKR
ILVTGCPLGDSTEKVIEAIEDNGGVVVCYENCSGAKDESLLVDEEKNPIDALTERYLRTACACMSPNDNRIEYLDYLIDE
YRVEGVVEVILQACHTYNVESHRIKTFVTNNKKVPYLKIETDYSKRDLGQLKTRVEAFIEML

Specific function: Unknown

COG id: COG1775

COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0007 [H]

Homologues:

Organism=Escherichia coli, GI87082427, Length=382, Percent_Identity=48.1675392670157, Blast_Score=392, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010327 [H]

Pfam domain/function: PF06050 HGD-D [H]

EC number: NA

Molecular weight: Translated: 43910; Mature: 43910

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLPDFIKDFSEAKRNSFVKMKEIKDEGGKIVGVYCGFAPWEVIAASGAVGAWLCGMDE
CCCCHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEEECCCHHHHHHCCCCHHHHCCCCCC
EPIEDAEKHLPRNLCPLIKSSYGFALTEKCPFYYFSDMLLGETTCDGKKKMYEALSKMKP
CCHHHHHHHCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
MHVMNIPQTPYGKDSYNYYKKAIIKLKEELEKNLNVEITEEKLKEKIKLRNRERTALRDY
CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCHHHHHHHH
YSLSKLCPPPMTGYNLRRVIQGTLYLSDKEKEIEDINNIIRETMKKYNEGERPVSKEAKR
HHHHHCCCCCCCCHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCE
ILVTGCPLGDSTEKVIEAIEDNGGVVVCYENCSGAKDESLLVDEEKNPIDALTERYLRTA
EEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHH
CACMSPNDNRIEYLDYLIDEYRVEGVVEVILQACHTYNVESHRIKTFVTNNKKVPYLKIE
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEEECCCCCCEEEEE
TDYSKRDLGQLKTRVEAFIEML
CCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKLPDFIKDFSEAKRNSFVKMKEIKDEGGKIVGVYCGFAPWEVIAASGAVGAWLCGMDE
CCCCHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEEECCCHHHHHHCCCCHHHHCCCCCC
EPIEDAEKHLPRNLCPLIKSSYGFALTEKCPFYYFSDMLLGETTCDGKKKMYEALSKMKP
CCHHHHHHHCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
MHVMNIPQTPYGKDSYNYYKKAIIKLKEELEKNLNVEITEEKLKEKIKLRNRERTALRDY
CEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCHHHHHHHH
YSLSKLCPPPMTGYNLRRVIQGTLYLSDKEKEIEDINNIIRETMKKYNEGERPVSKEAKR
HHHHHCCCCCCCCHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCE
ILVTGCPLGDSTEKVIEAIEDNGGVVVCYENCSGAKDESLLVDEEKNPIDALTERYLRTA
EEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHH
CACMSPNDNRIEYLDYLIDEYRVEGVVEVILQACHTYNVESHRIKTFVTNNKKVPYLKIE
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEEECCCCCCEEEEE
TDYSKRDLGQLKTRVEAFIEML
CCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]