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The map label for this gene is yjiM [C]

Identifier: 226950672

GI number: 226950672

Start: 3694906

End: 3696165

Strand: Reverse

Name: yjiM [C]

Synonym: CLM_3657

Alternate gene names: 226950672

Gene position: 3696165-3694906 (Counterclockwise)

Preceding gene: 226950673

Following gene: 226950671

Centisome position: 88.95

GC content: 31.67

Gene sequence:

>1260_bases
ATGGGAGATTATAGAAAACTATGGACGGATTTAGGGGTAGATCTAGAAAAGCATGATCAATTATGTGCTGTTTTACCAGA
ATTATATGGCTCTACATATTTGACACAAGAAAATAGACCAGAGGGAATGAATTATTTTAATTTTGTTGTGTCAGAAGTTC
ATGGACTTAGAATTCAAGAATTAGACGAACATAGAAAAAAAGGTGGAAAAGTAGTAGGAACTTTTTGTGTATTTGTTCCT
GAAGAAATTATTGTAGCAGCAAAAGCATTAAGTGTTGGTTTATGTGCAGGTTCTCAGTTTTGGATTGAAGATGGAGAAAA
GGTTTTACCAAGAAATATGTGTCCTCTTATAAAGGCTTTTATGGGTGCTAAAATAGGTGGTACATGCCCTTATTTCCAAT
CCTGTGATATGGTTATAGGAGAAACTACCTGTGATGGCAAGAAAAAAGCATGGGAAATATTAGATGAATATGTACCAGTA
CATGTAATGGATCTTCCTCAAATGAAAAGAGATAAAGACTTCAAAAAATGGGGAGAAGAAATTAATGACCTTATTAAAAA
AGTCGAAGAAATTACAGGCAATAAAATAACAGTAGAAGCACTAAAAGAAGGTATAAGAGTAACTAATGCTAAAAGAAAAG
CCTTAAAAAGATTATATGATTTAAGAAAATATAAACCATCACCAATAAGTGGATTAGACTGTTTATTAATAACTCAAATA
GCTTTCTACGATGATCCAAAGAGATTTACAGAAAAAGTTCATGAATTATGTGATGAATTAGAAGAAAGAATTAAAAACTC
TCAAGAAAGCAATAAAAAGAGAATATTAATAACAGGAACTCCAATGGCACTACCAAACTGGAAGCTTCATTCAATAATAG
AGAGTTTAGATGCTGAGGTTGTAGTAGAAGAAACTTGTACAGGAACTAGATATTTTGAAGGAGAAGTTTCAGAAGAGGGA
GAAACTTTAGAAGAATTAATTAAAAATTTGGCCGATAGATACTTAAATATAAATTGTGCCTGTTTTACGCCAAACACAGG
CAGAATAGATGATATAATAAAATATACCAAAGAATACGAAGCGGATGGAGTTATAGATACTAATTTATCTTTCTGTCATA
CTTATGCAGCTGAACACAGGGATGTAGAAGCAAAATTAAAGGAAGAAAATATTTCAATAATGCATATAGAAACAGATTAT
TCAACAGAAGATTCAGGACAGATAAAGACAAGAGTAGAAGCATTCCTTGAAATGATATAG

Upstream 100 bases:

>100_bases
ATAATAAGTATAACTGTAACCATTACATATTCAAATAACTTGCTATATATTAACTATGGTAAAATTGATATGAAGTAATT
GATTTGGAGGGATTTTATTA

Downstream 100 bases:

>100_bases
AATAAAAAGCTATTTTAAAATAGAGCTAATTTTAAAAACATATATTTTATAAATCAATGAATTTTATTTAAAAGTTCTAA
ATTAGGTTATATTAAAAAAT

Product: 2-hydroxyglutaryl-CoA dehydratase subunit D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MGDYRKLWTDLGVDLEKHDQLCAVLPELYGSTYLTQENRPEGMNYFNFVVSEVHGLRIQELDEHRKKGGKVVGTFCVFVP
EEIIVAAKALSVGLCAGSQFWIEDGEKVLPRNMCPLIKAFMGAKIGGTCPYFQSCDMVIGETTCDGKKKAWEILDEYVPV
HVMDLPQMKRDKDFKKWGEEINDLIKKVEEITGNKITVEALKEGIRVTNAKRKALKRLYDLRKYKPSPISGLDCLLITQI
AFYDDPKRFTEKVHELCDELEERIKNSQESNKKRILITGTPMALPNWKLHSIIESLDAEVVVEETCTGTRYFEGEVSEEG
ETLEELIKNLADRYLNINCACFTPNTGRIDDIIKYTKEYEADGVIDTNLSFCHTYAAEHRDVEAKLKEENISIMHIETDY
STEDSGQIKTRVEAFLEMI

Sequences:

>Translated_419_residues
MGDYRKLWTDLGVDLEKHDQLCAVLPELYGSTYLTQENRPEGMNYFNFVVSEVHGLRIQELDEHRKKGGKVVGTFCVFVP
EEIIVAAKALSVGLCAGSQFWIEDGEKVLPRNMCPLIKAFMGAKIGGTCPYFQSCDMVIGETTCDGKKKAWEILDEYVPV
HVMDLPQMKRDKDFKKWGEEINDLIKKVEEITGNKITVEALKEGIRVTNAKRKALKRLYDLRKYKPSPISGLDCLLITQI
AFYDDPKRFTEKVHELCDELEERIKNSQESNKKRILITGTPMALPNWKLHSIIESLDAEVVVEETCTGTRYFEGEVSEEG
ETLEELIKNLADRYLNINCACFTPNTGRIDDIIKYTKEYEADGVIDTNLSFCHTYAAEHRDVEAKLKEENISIMHIETDY
STEDSGQIKTRVEAFLEMI
>Mature_418_residues
GDYRKLWTDLGVDLEKHDQLCAVLPELYGSTYLTQENRPEGMNYFNFVVSEVHGLRIQELDEHRKKGGKVVGTFCVFVPE
EIIVAAKALSVGLCAGSQFWIEDGEKVLPRNMCPLIKAFMGAKIGGTCPYFQSCDMVIGETTCDGKKKAWEILDEYVPVH
VMDLPQMKRDKDFKKWGEEINDLIKKVEEITGNKITVEALKEGIRVTNAKRKALKRLYDLRKYKPSPISGLDCLLITQIA
FYDDPKRFTEKVHELCDELEERIKNSQESNKKRILITGTPMALPNWKLHSIIESLDAEVVVEETCTGTRYFEGEVSEEGE
TLEELIKNLADRYLNINCACFTPNTGRIDDIIKYTKEYEADGVIDTNLSFCHTYAAEHRDVEAKLKEENISIMHIETDYS
TEDSGQIKTRVEAFLEMI

Specific function: Unknown

COG id: COG1775

COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiM [H]

Homologues:

Organism=Escherichia coli, GI87082427, Length=364, Percent_Identity=41.4835164835165, Blast_Score=264, Evalue=8e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010327 [H]

Pfam domain/function: PF06050 HGD-D [H]

EC number: NA

Molecular weight: Translated: 47839; Mature: 47708

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDYRKLWTDLGVDLEKHDQLCAVLPELYGSTYLTQENRPEGMNYFNFVVSEVHGLRIQE
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHCCCHHHH
LDEHRKKGGKVVGTFCVFVPEEIIVAAKALSVGLCAGSQFWIEDGEKVLPRNMCPLIKAF
HHHHHHCCCCEEEEHEECCCHHHHHHHHHHHHHEECCCEEECCCCCHHCCCHHHHHHHHH
MGAKIGGTCPYFQSCDMVIGETTCDGKKKAWEILDEYVPVHVMDLPQMKRDKDFKKWGEE
HCCCCCCCCCCHHCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCHHCCCHHHHHHHH
INDLIKKVEEITGNKITVEALKEGIRVTNAKRKALKRLYDLRKYKPSPISGLDCLLITQI
HHHHHHHHHHHCCCEEEHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
AFYDDPKRFTEKVHELCDELEERIKNSQESNKKRILITGTPMALPNWKLHSIIESLDAEV
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCE
VVEETCTGTRYFEGEVSEEGETLEELIKNLADRYLNINCACFTPNTGRIDDIIKYTKEYE
EEECCCCCCEEECCCCCCCCHHHHHHHHHHHHHHEECEEEEECCCCCCHHHHHHHHHHHC
ADGVIDTNLSFCHTYAAEHRDVEAKLKEENISIMHIETDYSTEDSGQIKTRVEAFLEMI
CCCEEECCHHHHHHHHHHCCCHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC
>Mature Secondary Structure 
GDYRKLWTDLGVDLEKHDQLCAVLPELYGSTYLTQENRPEGMNYFNFVVSEVHGLRIQE
CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHCCCHHHH
LDEHRKKGGKVVGTFCVFVPEEIIVAAKALSVGLCAGSQFWIEDGEKVLPRNMCPLIKAF
HHHHHHCCCCEEEEHEECCCHHHHHHHHHHHHHEECCCEEECCCCCHHCCCHHHHHHHHH
MGAKIGGTCPYFQSCDMVIGETTCDGKKKAWEILDEYVPVHVMDLPQMKRDKDFKKWGEE
HCCCCCCCCCCHHCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCHHCCCHHHHHHHH
INDLIKKVEEITGNKITVEALKEGIRVTNAKRKALKRLYDLRKYKPSPISGLDCLLITQI
HHHHHHHHHHHCCCEEEHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
AFYDDPKRFTEKVHELCDELEERIKNSQESNKKRILITGTPMALPNWKLHSIIESLDAEV
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCE
VVEETCTGTRYFEGEVSEEGETLEELIKNLADRYLNINCACFTPNTGRIDDIIKYTKEYE
EEECCCCCCEEECCCCCCCCHHHHHHHHHHHHHHEECEEEEECCCCCCHHHHHHHHHHHC
ADGVIDTNLSFCHTYAAEHRDVEAKLKEENISIMHIETDYSTEDSGQIKTRVEAFLEMI
CCCEEECCHHHHHHHHHHCCCHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]