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The map label for this gene is yqiR [H]

Identifier: 226950624

GI number: 226950624

Start: 3645663

End: 3647291

Strand: Reverse

Name: yqiR [H]

Synonym: CLM_3608

Alternate gene names: 226950624

Gene position: 3647291-3645663 (Counterclockwise)

Preceding gene: 226950625

Following gene: 226950620

Centisome position: 87.77

GC content: 24.98

Gene sequence:

>1629_bases
ATGTTTATGGAAGAAGACTTTAAAATTATAAGTGAAAATATTAACAAGGGTACAATTAATATCAATAATAAAAATAATGT
ACTATCTGATAAATATTTATTAAAAAATAAAAGTAATAATAGGCATGTGGATATATTAAAAAATAAAGAAACCCATAAAA
AGATTAATAAAAATTCTAAAGTAGAAAGTAAAATAAGTATAAATGAATCAGAATGTGCAACTACTATAGATTATAAACTA
TACAGCGAAATGAAAAAAGATATAAAATATTATAAATCAGTTTTAGATGTTGTTAATAAAGTACTATATACAATAAACGA
ATGTATAGTAGTTGTGGATCAAAATGGAATAATTATAATGATGAGTGAATGCTATAAAAAGTTTATTAATTGCAAAGATC
CAGAGGGAAAATATGTTGCAGATGTTATAAAGGATACTATGTTACATAGAGTTTTAAAAACAGGGAACATAGAAAGTGGA
GAAGTACAAAAAATTAATGGCAAACAAGTAATTACTATGAGGATACCATTGAAAAAAGAAGGTAGAATTATTGGAGCAAT
AGGCAAAATAATGTTTAAAGATGTGAATGATTTTTATTTTTTATATGGAAAGTTAAATAAGTCAAAAAATACACATAAAT
GTTACGATAATAAATCAGAAAAAAATAGACGAGCTAAATATTTTTTTAAGGATATTGTTGGAGATTCTTCTGAAAGTAAT
AATATTAAAAGTTTAGCTAAGAAATCTGCAAATACAAATTCGAATGTTTTAATAGTAGGAGAAAGTGGAACAGGTAAAGA
ATTATATGCTCATTCAATTCATAATGCTAGTAATAGAAGATTAGGGCCTTTTATAAAAATTAACTGTGGGGCTATACCAG
CTGAATTGTTAGAGTCTGAATTATTTGGATATGAAGATGGTGCTTTTACAGGAGCTAAAAAAGGGGGGAAAAAAGGAAAA
TTTGAGTTGGCAAATGGAGGTACTATATTTTTAGATGAAATTGGTGATATGCCAATGTGTATGCAAGTTAAGCTTCTAAG
AGTCATTCAAGAAAGAGAAGTAGAAAAAGTGGGGAGCAATATACTAAAGAAAATTGATGTTAGGATAATTGCAGCTACAA
ATAAAAATCTTGAAAAGTTAGTCGAAAAAAATAAATTTAGAGAGGATTTATATTATAGATTGAATGTTATAAGGATTAAT
GTTCCATCACTAAGAGAAAGAAAAGAAGATATATTATTAATATCAGATTTTTTAGTAAAAAAAGTATCTCATAGATTAGG
CATATGTATAAAAGAAATATCTAAAGAAGCTAAAGAATATTTATATAATTATAATTGGCCAGGAAATATTAGGGAGCTTG
AGAATGTAATAGAACGATCTGCAAATTTATTAGACTCAGATTTTGTTATAAAACCAAAACATTTACCAAAAGAAATATTA
AAAGGTTATATTGTAAAAGCCCCCACTAAAGAAAATAAATATTTAAAAGACATAATTTCGGAAGTAGAAAAAGAAGTTAT
TTGTAACTGTTTAGAAAAAAATAATGGAAATAAAAATAAAACCTCTAAGATATTAGGAATAAGTAGAGCAAATTTGTATA
AGAAAATATCAGAATATAATATAGTTTAA

Upstream 100 bases:

>100_bases
TTTTAACAATGTAAAGATATGTATTATAAAAGAATATTTGTCAAATATTGCATCAAGGTATATAATGAAGTTATAGGTAA
TTACTTAGGGGGTATATTCT

Downstream 100 bases:

>100_bases
CTTGATAAAATATAAAAACAACAGAGCACTTAATAATGGATCTGTTGTTTTTTATTTTATTTTTTAAGAAGATGTTTTTC
TATATTCTAAGGTATTACTC

Product: sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 542; Mature: 542

Protein sequence:

>542_residues
MFMEEDFKIISENINKGTININNKNNVLSDKYLLKNKSNNRHVDILKNKETHKKINKNSKVESKISINESECATTIDYKL
YSEMKKDIKYYKSVLDVVNKVLYTINECIVVVDQNGIIIMMSECYKKFINCKDPEGKYVADVIKDTMLHRVLKTGNIESG
EVQKINGKQVITMRIPLKKEGRIIGAIGKIMFKDVNDFYFLYGKLNKSKNTHKCYDNKSEKNRRAKYFFKDIVGDSSESN
NIKSLAKKSANTNSNVLIVGESGTGKELYAHSIHNASNRRLGPFIKINCGAIPAELLESELFGYEDGAFTGAKKGGKKGK
FELANGGTIFLDEIGDMPMCMQVKLLRVIQEREVEKVGSNILKKIDVRIIAATNKNLEKLVEKNKFREDLYYRLNVIRIN
VPSLRERKEDILLISDFLVKKVSHRLGICIKEISKEAKEYLYNYNWPGNIRELENVIERSANLLDSDFVIKPKHLPKEIL
KGYIVKAPTKENKYLKDIISEVEKEVICNCLEKNNGNKNKTSKILGISRANLYKKISEYNIV

Sequences:

>Translated_542_residues
MFMEEDFKIISENINKGTININNKNNVLSDKYLLKNKSNNRHVDILKNKETHKKINKNSKVESKISINESECATTIDYKL
YSEMKKDIKYYKSVLDVVNKVLYTINECIVVVDQNGIIIMMSECYKKFINCKDPEGKYVADVIKDTMLHRVLKTGNIESG
EVQKINGKQVITMRIPLKKEGRIIGAIGKIMFKDVNDFYFLYGKLNKSKNTHKCYDNKSEKNRRAKYFFKDIVGDSSESN
NIKSLAKKSANTNSNVLIVGESGTGKELYAHSIHNASNRRLGPFIKINCGAIPAELLESELFGYEDGAFTGAKKGGKKGK
FELANGGTIFLDEIGDMPMCMQVKLLRVIQEREVEKVGSNILKKIDVRIIAATNKNLEKLVEKNKFREDLYYRLNVIRIN
VPSLRERKEDILLISDFLVKKVSHRLGICIKEISKEAKEYLYNYNWPGNIRELENVIERSANLLDSDFVIKPKHLPKEIL
KGYIVKAPTKENKYLKDIISEVEKEVICNCLEKNNGNKNKTSKILGISRANLYKKISEYNIV
>Mature_542_residues
MFMEEDFKIISENINKGTININNKNNVLSDKYLLKNKSNNRHVDILKNKETHKKINKNSKVESKISINESECATTIDYKL
YSEMKKDIKYYKSVLDVVNKVLYTINECIVVVDQNGIIIMMSECYKKFINCKDPEGKYVADVIKDTMLHRVLKTGNIESG
EVQKINGKQVITMRIPLKKEGRIIGAIGKIMFKDVNDFYFLYGKLNKSKNTHKCYDNKSEKNRRAKYFFKDIVGDSSESN
NIKSLAKKSANTNSNVLIVGESGTGKELYAHSIHNASNRRLGPFIKINCGAIPAELLESELFGYEDGAFTGAKKGGKKGK
FELANGGTIFLDEIGDMPMCMQVKLLRVIQEREVEKVGSNILKKIDVRIIAATNKNLEKLVEKNKFREDLYYRLNVIRIN
VPSLRERKEDILLISDFLVKKVSHRLGICIKEISKEAKEYLYNYNWPGNIRELENVIERSANLLDSDFVIKPKHLPKEIL
KGYIVKAPTKENKYLKDIISEVEKEVICNCLEKNNGNKNKTSKILGISRANLYKKISEYNIV

Specific function: Member Of The Two-Component Regulatory System Atos/Atoc Involved In The Transcriptional Regulation Of The Ato Genes For Acetoacetate Metabolism. Also An Inhibitor Of Polyamine Biosynthesis. [C]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=320, Percent_Identity=47.5, Blast_Score=285, Evalue=4e-78,
Organism=Escherichia coli, GI1790437, Length=341, Percent_Identity=44.2815249266862, Blast_Score=284, Evalue=8e-78,
Organism=Escherichia coli, GI1789233, Length=340, Percent_Identity=42.9411764705882, Blast_Score=276, Evalue=3e-75,
Organism=Escherichia coli, GI1786524, Length=367, Percent_Identity=36.5122615803815, Blast_Score=260, Evalue=1e-70,
Organism=Escherichia coli, GI1788905, Length=385, Percent_Identity=38.961038961039, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1789087, Length=319, Percent_Identity=44.5141065830721, Blast_Score=256, Evalue=4e-69,
Organism=Escherichia coli, GI87082117, Length=327, Percent_Identity=41.5902140672783, Blast_Score=253, Evalue=3e-68,
Organism=Escherichia coli, GI1790299, Length=332, Percent_Identity=37.9518072289157, Blast_Score=253, Evalue=3e-68,
Organism=Escherichia coli, GI87082152, Length=310, Percent_Identity=37.4193548387097, Blast_Score=225, Evalue=4e-60,
Organism=Escherichia coli, GI1787583, Length=357, Percent_Identity=35.2941176470588, Blast_Score=221, Evalue=1e-58,
Organism=Escherichia coli, GI87081872, Length=311, Percent_Identity=38.9067524115756, Blast_Score=215, Evalue=6e-57,
Organism=Escherichia coli, GI87081858, Length=327, Percent_Identity=31.4984709480122, Blast_Score=161, Evalue=1e-40,
Organism=Escherichia coli, GI1789828, Length=233, Percent_Identity=33.4763948497854, Blast_Score=136, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 62062; Mature: 62062

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMEEDFKIISENINKGTININNKNNVLSDKYLLKNKSNNRHVDILKNKETHKKINKNSK
CCCCHHHHHHHCCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEEEECCCHHHHHHCCCCC
VESKISINESECATTIDYKLYSEMKKDIKYYKSVLDVVNKVLYTINECIVVVDQNGIIIM
CCCEEECCHHHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEE
MSECYKKFINCKDPEGKYVADVIKDTMLHRVLKTGNIESGEVQKINGKQVITMRIPLKKE
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEECCCCCC
GRIIGAIGKIMFKDVNDFYFLYGKLNKSKNTHKCYDNKSEKNRRAKYFFKDIVGDSSESN
CCEEEHHHHHHHHCCCCEEEEEEEECCCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCC
NIKSLAKKSANTNSNVLIVGESGTGKELYAHSIHNASNRRLGPFIKINCGAIPAELLESE
HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHH
LFGYEDGAFTGAKKGGKKGKFELANGGTIFLDEIGDMPMCMQVKLLRVIQEREVEKVGSN
HCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
ILKKIDVRIIAATNKNLEKLVEKNKFREDLYYRLNVIRINVPSLRERKEDILLISDFLVK
HHHHHCEEEEEECCCHHHHHHHHHHHHHHHEEEEEEEEEECCHHHHCHHCEEHHHHHHHH
KVSHRLGICIKEISKEAKEYLYNYNWPGNIRELENVIERSANLLDSDFVIKPKHLPKEIL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCHHHHH
KGYIVKAPTKENKYLKDIISEVEKEVICNCLEKNNGNKNKTSKILGISRANLYKKISEYN
CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEECHHHHHHHHHHHCC
IV
CC
>Mature Secondary Structure
MFMEEDFKIISENINKGTININNKNNVLSDKYLLKNKSNNRHVDILKNKETHKKINKNSK
CCCCHHHHHHHCCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEEEECCCHHHHHHCCCCC
VESKISINESECATTIDYKLYSEMKKDIKYYKSVLDVVNKVLYTINECIVVVDQNGIIIM
CCCEEECCHHHHHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEE
MSECYKKFINCKDPEGKYVADVIKDTMLHRVLKTGNIESGEVQKINGKQVITMRIPLKKE
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEECCCCCC
GRIIGAIGKIMFKDVNDFYFLYGKLNKSKNTHKCYDNKSEKNRRAKYFFKDIVGDSSESN
CCEEEHHHHHHHHCCCCEEEEEEEECCCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCC
NIKSLAKKSANTNSNVLIVGESGTGKELYAHSIHNASNRRLGPFIKINCGAIPAELLESE
HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHH
LFGYEDGAFTGAKKGGKKGKFELANGGTIFLDEIGDMPMCMQVKLLRVIQEREVEKVGSN
HCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
ILKKIDVRIIAATNKNLEKLVEKNKFREDLYYRLNVIRINVPSLRERKEDILLISDFLVK
HHHHHCEEEEEECCCHHHHHHHHHHHHHHHEEEEEEEEEECCHHHHCHHCEEHHHHHHHH
KVSHRLGICIKEISKEAKEYLYNYNWPGNIRELENVIERSANLLDSDFVIKPKHLPKEIL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCHHHHH
KGYIVKAPTKENKYLKDIISEVEKEVICNCLEKNNGNKNKTSKILGISRANLYKKISEYN
CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHEECHHHHHHHHHHHCC
IV
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]