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The map label for this gene is oppA [H]

Identifier: 226950580

GI number: 226950580

Start: 3593658

End: 3595340

Strand: Reverse

Name: oppA [H]

Synonym: CLM_3563

Alternate gene names: 226950580

Gene position: 3595340-3593658 (Counterclockwise)

Preceding gene: 226950584

Following gene: 226950579

Centisome position: 86.52

GC content: 31.49

Gene sequence:

>1683_bases
GTGAAAAGTAAAAGGTTATTGGCAGCTTTAGTATCTTGTGTGGTTTTAACTTCGGTAGCATTAGCAGGATGTGGAGGAAA
GGAAACTGCATCAGGAAGTAAAGGTGCAGATAAAGAACAATATCTAAATATGATTTTGCAGGAAGAACCTAAAAGTTTAG
ACCCAGCTAAATCAACAGACTTGTATTCTTCACAGGTTATTTCTGAGGTTTATGATGGATTAACAAGATTGGAAGTAGAT
GAAAAAGGTAAAGATGTAGTTAAGCCAGCAGGAGCAGAAAAATGGGATGTATCTGAGGATGGATTAAAATGGACTTTTCA
TTTAAGAGATTATGAGTGGTCTGATGGAAAGAAGGTTACTGCAAAGGATTATGAATATGGTATAAAAAGGAACTTAGATC
CTAAAACTGCATCAGAGTATGCTTACTTATTAGCTCCAATAAAAAATGCGAACGAATATAATGCAGGGAAAGCAAAAGCT
GAAGAAGTTGGAGTAAAAGCTTTAGATGATAAAACTTTAGAAATAACTTTAGCTGGACCTTGTGCATATTTCTTAAAGAT
AACATATTTTAAATTAATGATGCCACAAAGACAGGATATAGTTGAAAAGTATGGAGAAAAATTTGGTACAGAAGCTTCTA
ATATGGTATTCTGTGGACCTTTTACCATAAAGGAATGGGTACATGCAAACAAAATGGAATTAGTTAAAAATGAAAAATAT
TGGGATGCTAAATCTGTTAAATTAAATAACGTTCATATGAAAATTATAAATAATGAAGCTGCTAGAATGCAAGAGCTTCT
AAATGGAGGAATAGATTTCAGTAATGTTCAAAAGCCAGAGTGGAAAGAAAAGTTCAAAAAAGCTGATAAATTTGAAGTGA
AAAAAGTTATTGAACCAGCAACAAATATTGAATTCTTTAATCAAAATGTTAAATTATTTAGTAATGCTAAAGTAAGAAAA
GCTTTTTCTTTAGCAGTTAATAGAGAAGAGGTTTCAAAAACTTTATTTAAAAATGATTTTACACCAGCCTATGGGTTTGT
GCCACCTTCATTACAAATAGGAGATAAAGAATTTAGAAAAGAAGCTAAAGAAGAACCAATTAAGAAATTAAAAGAAGAAA
ATCAAGATCCAAAGAAACTTTTAATTGAAGGATTAAAAGAATTAGGAATGGATCCGGATCCAAGTAAAGTAACAGTAAAT
TATTTAACAGGCTCTACAAGTGATCAACAAAAAGAAATTTGCGAATTTTTCCAAGAGATGTATCAAAAAGCTTTGGGGGT
TAAAGTAAATATAGAATATGTTCAATGGCCAGTATACATGAAGAGAATAAATAATGCGGAATATGAAATATCAGGTATGG
CTTGGACAGGAGATTATGATGATCCTATGACAGAATTTGATTTGTGGATGACTGGGGCCAAAGCGCTTCCAACAAATTAC
TCAAATACAAAATATGATGAATTAATTAAAAAAGCTGCATTGCTACCAGAAGAAAAGAATGAAGAAAGAATGAAACTGTT
TAAAGAAGCTGAACAAATATTATTATATGAAGATGCTGTAATAGCACCAGCAGTTTATAGAGCTAGAAATATTTATCAAA
GAAAATATGTAAAGGGAATAATGGTTCCACAATTCGGTTCTTTATATGATGTTAAATATGCCCATACGGAAGGTAGGGAG
TAA

Upstream 100 bases:

>100_bases
AGAAAACATATTTGAAATATAGTTGTTTTAAAATAATTTTTATTGGAAATAAGTGGATTTCCACTTGTTTTTTATAAAAT
AACTTAAAGGGGGAAGTTTA

Downstream 100 bases:

>100_bases
TAGTATGATTTTATGCAGCAGAGCCTTTTAATGGCTCTGCTGTTATAAGTTACATAAAAATATATTGGGGAGGGATAAAG
ATGTTTAAGTATATCTTAAA

Product: oligopeptide/dipeptide ABC transporter oligopeptide/dipeptide-binding protein

Products: NA

Alternate protein names: Stage 0 sporulation protein KA [H]

Number of amino acids: Translated: 560; Mature: 560

Protein sequence:

>560_residues
MKSKRLLAALVSCVVLTSVALAGCGGKETASGSKGADKEQYLNMILQEEPKSLDPAKSTDLYSSQVISEVYDGLTRLEVD
EKGKDVVKPAGAEKWDVSEDGLKWTFHLRDYEWSDGKKVTAKDYEYGIKRNLDPKTASEYAYLLAPIKNANEYNAGKAKA
EEVGVKALDDKTLEITLAGPCAYFLKITYFKLMMPQRQDIVEKYGEKFGTEASNMVFCGPFTIKEWVHANKMELVKNEKY
WDAKSVKLNNVHMKIINNEAARMQELLNGGIDFSNVQKPEWKEKFKKADKFEVKKVIEPATNIEFFNQNVKLFSNAKVRK
AFSLAVNREEVSKTLFKNDFTPAYGFVPPSLQIGDKEFRKEAKEEPIKKLKEENQDPKKLLIEGLKELGMDPDPSKVTVN
YLTGSTSDQQKEICEFFQEMYQKALGVKVNIEYVQWPVYMKRINNAEYEISGMAWTGDYDDPMTEFDLWMTGAKALPTNY
SNTKYDELIKKAALLPEEKNEERMKLFKEAEQILLYEDAVIAPAVYRARNIYQRKYVKGIMVPQFGSLYDVKYAHTEGRE

Sequences:

>Translated_560_residues
MKSKRLLAALVSCVVLTSVALAGCGGKETASGSKGADKEQYLNMILQEEPKSLDPAKSTDLYSSQVISEVYDGLTRLEVD
EKGKDVVKPAGAEKWDVSEDGLKWTFHLRDYEWSDGKKVTAKDYEYGIKRNLDPKTASEYAYLLAPIKNANEYNAGKAKA
EEVGVKALDDKTLEITLAGPCAYFLKITYFKLMMPQRQDIVEKYGEKFGTEASNMVFCGPFTIKEWVHANKMELVKNEKY
WDAKSVKLNNVHMKIINNEAARMQELLNGGIDFSNVQKPEWKEKFKKADKFEVKKVIEPATNIEFFNQNVKLFSNAKVRK
AFSLAVNREEVSKTLFKNDFTPAYGFVPPSLQIGDKEFRKEAKEEPIKKLKEENQDPKKLLIEGLKELGMDPDPSKVTVN
YLTGSTSDQQKEICEFFQEMYQKALGVKVNIEYVQWPVYMKRINNAEYEISGMAWTGDYDDPMTEFDLWMTGAKALPTNY
SNTKYDELIKKAALLPEEKNEERMKLFKEAEQILLYEDAVIAPAVYRARNIYQRKYVKGIMVPQFGSLYDVKYAHTEGRE
>Mature_560_residues
MKSKRLLAALVSCVVLTSVALAGCGGKETASGSKGADKEQYLNMILQEEPKSLDPAKSTDLYSSQVISEVYDGLTRLEVD
EKGKDVVKPAGAEKWDVSEDGLKWTFHLRDYEWSDGKKVTAKDYEYGIKRNLDPKTASEYAYLLAPIKNANEYNAGKAKA
EEVGVKALDDKTLEITLAGPCAYFLKITYFKLMMPQRQDIVEKYGEKFGTEASNMVFCGPFTIKEWVHANKMELVKNEKY
WDAKSVKLNNVHMKIINNEAARMQELLNGGIDFSNVQKPEWKEKFKKADKFEVKKVIEPATNIEFFNQNVKLFSNAKVRK
AFSLAVNREEVSKTLFKNDFTPAYGFVPPSLQIGDKEFRKEAKEEPIKKLKEENQDPKKLLIEGLKELGMDPDPSKVTVN
YLTGSTSDQQKEICEFFQEMYQKALGVKVNIEYVQWPVYMKRINNAEYEISGMAWTGDYDDPMTEFDLWMTGAKALPTNY
SNTKYDELIKKAALLPEEKNEERMKLFKEAEQILLYEDAVIAPAVYRARNIYQRKYVKGIMVPQFGSLYDVKYAHTEGRE

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, It binds peptides up to five amino acids long with high affinity. Also required for sporulation and competence [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87081878, Length=552, Percent_Identity=30.0724637681159, Blast_Score=209, Evalue=4e-55,
Organism=Escherichia coli, GI1787495, Length=547, Percent_Identity=28.8848263254113, Blast_Score=207, Evalue=2e-54,
Organism=Escherichia coli, GI1789397, Length=500, Percent_Identity=28, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1789966, Length=499, Percent_Identity=25.250501002004, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1787052, Length=518, Percent_Identity=25.0965250965251, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1787762, Length=514, Percent_Identity=22.568093385214, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1787551, Length=519, Percent_Identity=22.5433526011561, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 63973; Mature: 63973

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKRLLAALVSCVVLTSVALAGCGGKETASGSKGADKEQYLNMILQEEPKSLDPAKSTD
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCH
LYSSQVISEVYDGLTRLEVDEKGKDVVKPAGAEKWDVSEDGLKWTFHLRDYEWSDGKKVT
HHHHHHHHHHHCCHHEEEECCCCCHHHCCCCCCCCCCCCCCCEEEEEEECEECCCCCEEE
AKDYEYGIKRNLDPKTASEYAYLLAPIKNANEYNAGKAKAEEVGVKALDDKTLEITLAGP
CCHHHHHCCCCCCCCCHHHHEEEEEECCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCH
CAYFLKITYFKLMMPQRQDIVEKYGEKFGTEASNMVFCGPFTIKEWVHANKMELVKNEKY
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCHHHHHCCCCC
WDAKSVKLNNVHMKIINNEAARMQELLNGGIDFSNVQKPEWKEKFKKADKFEVKKVIEPA
CCCCCEEECCEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCC
TNIEFFNQNVKLFSNAKVRKAFSLAVNREEVSKTLFKNDFTPAYGFVPPSLQIGDKEFRK
CCHHHHCCCEEEECCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
EAKEEPIKKLKEENQDPKKLLIEGLKELGMDPDPSKVTVNYLTGSTSDQQKEICEFFQEM
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHH
YQKALGVKVNIEYVQWPVYMKRINNAEYEISGMAWTGDYDDPMTEFDLWMTGAKALPTNY
HHHHCCEEEEEEEEEHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCC
SNTKYDELIKKAALLPEEKNEERMKLFKEAEQILLYEDAVIAPAVYRARNIYQRKYVKGI
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
MVPQFGSLYDVKYAHTEGRE
CCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MKSKRLLAALVSCVVLTSVALAGCGGKETASGSKGADKEQYLNMILQEEPKSLDPAKSTD
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCH
LYSSQVISEVYDGLTRLEVDEKGKDVVKPAGAEKWDVSEDGLKWTFHLRDYEWSDGKKVT
HHHHHHHHHHHCCHHEEEECCCCCHHHCCCCCCCCCCCCCCCEEEEEEECEECCCCCEEE
AKDYEYGIKRNLDPKTASEYAYLLAPIKNANEYNAGKAKAEEVGVKALDDKTLEITLAGP
CCHHHHHCCCCCCCCCHHHHEEEEEECCCCCCCCCCCCHHHHCCCEEECCCEEEEEECCH
CAYFLKITYFKLMMPQRQDIVEKYGEKFGTEASNMVFCGPFTIKEWVHANKMELVKNEKY
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCHHHHHCCCCC
WDAKSVKLNNVHMKIINNEAARMQELLNGGIDFSNVQKPEWKEKFKKADKFEVKKVIEPA
CCCCCEEECCEEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCC
TNIEFFNQNVKLFSNAKVRKAFSLAVNREEVSKTLFKNDFTPAYGFVPPSLQIGDKEFRK
CCHHHHCCCEEEECCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
EAKEEPIKKLKEENQDPKKLLIEGLKELGMDPDPSKVTVNYLTGSTSDQQKEICEFFQEM
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHH
YQKALGVKVNIEYVQWPVYMKRINNAEYEISGMAWTGDYDDPMTEFDLWMTGAKALPTNY
HHHHCCEEEEEEEEEHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCC
SNTKYDELIKKAALLPEEKNEERMKLFKEAEQILLYEDAVIAPAVYRARNIYQRKYVKGI
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
MVPQFGSLYDVKYAHTEGRE
CCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]