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The map label for this gene is oppB [H]

Identifier: 226950579

GI number: 226950579

Start: 3592648

End: 3593577

Strand: Reverse

Name: oppB [H]

Synonym: CLM_3562

Alternate gene names: 226950579

Gene position: 3593577-3592648 (Counterclockwise)

Preceding gene: 226950580

Following gene: 226950578

Centisome position: 86.48

GC content: 31.08

Gene sequence:

>930_bases
ATGTTTAAGTATATCTTAAAAAGATTAGGATATATGCTACTTACTTTATGGATAGTAATAACTATAACCTTTGTATTAAT
GCATACTATACCCGGAGATCCTTTAGCATCTAGCGCTAAAAGATTACCACCACAAATAAGAGCTAATTATTATGCTAAAT
ATGGATTAGATAAACCATTAACAACGCAATACGCAGTTTATATGAAAAATTTATTAAAAGGTGATTTAGGAGATTCTTTA
GCTTTTGCAGGAAGAAGTGTAAATACAGTTATAAAAGATGGATTGCCAGCATCAGCACGAATAGGTATTCAAGCAGTATT
CTTAGGGTTTACATTAGGAATAATATTAGGGGTTGTGGCAGCCTTTAAAAGGAATAAATGGCCAGATTATATAGTGATGT
TTTTAGCTTTAATTGGTGTTTCTATACCAAGTTTCGTTTTTGCAGCACTACTTCAATATATATTTACAGTTAAATTTATG
ATATTGCCAACTACTGGTTGGGGTGGTGCAAAGTATACTATACTGCCTACGATAGCTTTAAGTTTAAGTCCTTTAGCTAT
ATATGCAAGATATATGAGGAATGAATGTTTAGATGTTTTAGGACAGGATTATATATTGACAGCAAAAGCAAAGGGTGTAT
CAAAGGTTTCTTTAGCTTGGAAACATATAATAAGAAATGCTATTTTGCCTAGTATAACTATACTAGGTCCTCAAATAGCA
ACTATATTAACAGGATCTTTCGTTATTGAAGGTATATATGGCATACCAGGATTAGGCAGTTCTTTTGTAGGAGCTGTAAA
TAATATGGATTATTCTATGATTATGGGGCTTACTGTATTTATGGCTACCCTTTATATATTCTCTTTATTAATTGTAGACA
TATTATATGGAATTATAGATCCAAGAATTAGGATTACAAACTCAAAATGA

Upstream 100 bases:

>100_bases
ATACGGAAGGTAGGGAGTAATAGTATGATTTTATGCAGCAGAGCCTTTTAATGGCTCTGCTGTTATAAGTTACATAAAAA
TATATTGGGGAGGGATAAAG

Downstream 100 bases:

>100_bases
TAAGGGGGGAGAAAAATGGCTGAAATAAGTAAAGATAAATTTGAAATAATAGGAATAGATAAAAATGCATCTAATGAAAT
AAATAGACCTAATATAACTT

Product: oligopeptide/dipeptide ABC transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: Stage 0 sporulation protein KB [H]

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MFKYILKRLGYMLLTLWIVITITFVLMHTIPGDPLASSAKRLPPQIRANYYAKYGLDKPLTTQYAVYMKNLLKGDLGDSL
AFAGRSVNTVIKDGLPASARIGIQAVFLGFTLGIILGVVAAFKRNKWPDYIVMFLALIGVSIPSFVFAALLQYIFTVKFM
ILPTTGWGGAKYTILPTIALSLSPLAIYARYMRNECLDVLGQDYILTAKAKGVSKVSLAWKHIIRNAILPSITILGPQIA
TILTGSFVIEGIYGIPGLGSSFVGAVNNMDYSMIMGLTVFMATLYIFSLLIVDILYGIIDPRIRITNSK

Sequences:

>Translated_309_residues
MFKYILKRLGYMLLTLWIVITITFVLMHTIPGDPLASSAKRLPPQIRANYYAKYGLDKPLTTQYAVYMKNLLKGDLGDSL
AFAGRSVNTVIKDGLPASARIGIQAVFLGFTLGIILGVVAAFKRNKWPDYIVMFLALIGVSIPSFVFAALLQYIFTVKFM
ILPTTGWGGAKYTILPTIALSLSPLAIYARYMRNECLDVLGQDYILTAKAKGVSKVSLAWKHIIRNAILPSITILGPQIA
TILTGSFVIEGIYGIPGLGSSFVGAVNNMDYSMIMGLTVFMATLYIFSLLIVDILYGIIDPRIRITNSK
>Mature_309_residues
MFKYILKRLGYMLLTLWIVITITFVLMHTIPGDPLASSAKRLPPQIRANYYAKYGLDKPLTTQYAVYMKNLLKGDLGDSL
AFAGRSVNTVIKDGLPASARIGIQAVFLGFTLGIILGVVAAFKRNKWPDYIVMFLALIGVSIPSFVFAALLQYIFTVKFM
ILPTTGWGGAKYTILPTIALSLSPLAIYARYMRNECLDVLGQDYILTAKAKGVSKVSLAWKHIIRNAILPSITILGPQIA
TILTGSFVIEGIYGIPGLGSSFVGAVNNMDYSMIMGLTVFMATLYIFSLLIVDILYGIIDPRIRITNSK

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane. Also required for sporulation and competence [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=307, Percent_Identity=44.9511400651466, Blast_Score=251, Evalue=5e-68,
Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=34.1176470588235, Blast_Score=193, Evalue=9e-51,
Organism=Escherichia coli, GI1787053, Length=305, Percent_Identity=35.7377049180328, Blast_Score=193, Evalue=2e-50,
Organism=Escherichia coli, GI1789888, Length=308, Percent_Identity=35.3896103896104, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1787761, Length=327, Percent_Identity=31.8042813455657, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI1788504, Length=366, Percent_Identity=30.0546448087432, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=27.8388278388278, Blast_Score=115, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33969; Mature: 33969

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKYILKRLGYMLLTLWIVITITFVLMHTIPGDPLASSAKRLPPQIRANYYAKYGLDKPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCC
TTQYAVYMKNLLKGDLGDSLAFAGRSVNTVIKDGLPASARIGIQAVFLGFTLGIILGVVA
HHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AFKRNKWPDYIVMFLALIGVSIPSFVFAALLQYIFTVKFMILPTTGWGGAKYTILPTIAL
HHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEHHHHHHH
SLSPLAIYARYMRNECLDVLGQDYILTAKAKGVSKVSLAWKHIIRNAILPSITILGPQIA
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHH
TILTGSFVIEGIYGIPGLGSSFVGAVNNMDYSMIMGLTVFMATLYIFSLLIVDILYGIID
HHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PRIRITNSK
CCEEECCCC
>Mature Secondary Structure
MFKYILKRLGYMLLTLWIVITITFVLMHTIPGDPLASSAKRLPPQIRANYYAKYGLDKPL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCC
TTQYAVYMKNLLKGDLGDSLAFAGRSVNTVIKDGLPASARIGIQAVFLGFTLGIILGVVA
HHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AFKRNKWPDYIVMFLALIGVSIPSFVFAALLQYIFTVKFMILPTTGWGGAKYTILPTIAL
HHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEHHHHHHH
SLSPLAIYARYMRNECLDVLGQDYILTAKAKGVSKVSLAWKHIIRNAILPSITILGPQIA
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHCCHHHH
TILTGSFVIEGIYGIPGLGSSFVGAVNNMDYSMIMGLTVFMATLYIFSLLIVDILYGIID
HHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PRIRITNSK
CCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]