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The map label for this gene is dppC [H]

Identifier: 226950578

GI number: 226950578

Start: 3591715

End: 3592632

Strand: Reverse

Name: dppC [H]

Synonym: CLM_3561

Alternate gene names: 226950578

Gene position: 3592632-3591715 (Counterclockwise)

Preceding gene: 226950579

Following gene: 226950577

Centisome position: 86.46

GC content: 31.59

Gene sequence:

>918_bases
ATGGCTGAAATAAGTAAAGATAAATTTGAAATAATAGGAATAGATAAAAATGCATCTAATGAAATAAATAGACCTAATAT
AACTTATTGGCAGGATGCTTGGAGAAGACTAAAGCAAAATAAGGTAGCCATAGGGTCATTGATATTACTTATATTAATAG
CTTTAATGACAATAATAGGACCTTATTTAACCCCATATAAATATTGGGCTACAGATTCTAATATTGTAAATATGACCCCT
AATTCTAATCATTGGTTTGGAACAGATATGTTAGGTAGGGATATATTTGCTAGAGTATGGAAGGGTGGGAGAGTTTCTAT
AATAATAGGAATTTTAGGAACTATTATAGAAATGACAATTGGAGTTATATATGGTGGAATATCCGGTTATTTTGGTGGAA
TGGTTGATGATATAATGATGAGAATAGTGGAAATATTGCTAAGTGTTCCCTATTTAATAGTTGTTATTATAATTTCTCTT
ATATTGGGAAAAGGGGTTATATCTTTAGTAATAGCTATGACTATAACTGGTTGGTGTGGTATGGCTAGAATAATAAGAGG
ACAAATTCTACAAATAAGAGAGCAAGAGTATGTATTAGCAGCTCAAGCTTTAGGTGCTAGGCCTTCAAGAATAATAAAGA
AACATCTATTACCCAATACTATGGGTATATTAATTGTTAATATTACTTTAGATGTCCCATCATTTATATTTGGAGAAGCT
TTTTTAAGTTATATAGGACTAGGTATACAATCACCAAATACTAGCTGGGGTTCTTTGGCATCAGCGGCACAACCAAATCT
AATGTTCTATCCTTATCAATTGTTTTTCCCTGCTTTGTTTATAAGTTTGACTATGCTATCATTTAATTTACTAGGCGATG
GATTAAGGGACGCTCTTGATCCTAAGATGCGTCAATAA

Upstream 100 bases:

>100_bases
TACCCTTTATATATTCTCTTTATTAATTGTAGACATATTATATGGAATTATAGATCCAAGAATTAGGATTACAAACTCAA
AATGATAAGGGGGGAGAAAA

Downstream 100 bases:

>100_bases
AGGGGGGGAATGTGATGGAGAGAATATTAGAGGTAAGAAATTTAAGAGTTTCTTATCATACTTATGCGGGAGAAGTACAA
TCTGTTAGAAATATAAGCTT

Product: oligopeptide/dipeptide ABC transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MAEISKDKFEIIGIDKNASNEINRPNITYWQDAWRRLKQNKVAIGSLILLILIALMTIIGPYLTPYKYWATDSNIVNMTP
NSNHWFGTDMLGRDIFARVWKGGRVSIIIGILGTIIEMTIGVIYGGISGYFGGMVDDIMMRIVEILLSVPYLIVVIIISL
ILGKGVISLVIAMTITGWCGMARIIRGQILQIREQEYVLAAQALGARPSRIIKKHLLPNTMGILIVNITLDVPSFIFGEA
FLSYIGLGIQSPNTSWGSLASAAQPNLMFYPYQLFFPALFISLTMLSFNLLGDGLRDALDPKMRQ

Sequences:

>Translated_305_residues
MAEISKDKFEIIGIDKNASNEINRPNITYWQDAWRRLKQNKVAIGSLILLILIALMTIIGPYLTPYKYWATDSNIVNMTP
NSNHWFGTDMLGRDIFARVWKGGRVSIIIGILGTIIEMTIGVIYGGISGYFGGMVDDIMMRIVEILLSVPYLIVVIIISL
ILGKGVISLVIAMTITGWCGMARIIRGQILQIREQEYVLAAQALGARPSRIIKKHLLPNTMGILIVNITLDVPSFIFGEA
FLSYIGLGIQSPNTSWGSLASAAQPNLMFYPYQLFFPALFISLTMLSFNLLGDGLRDALDPKMRQ
>Mature_304_residues
AEISKDKFEIIGIDKNASNEINRPNITYWQDAWRRLKQNKVAIGSLILLILIALMTIIGPYLTPYKYWATDSNIVNMTPN
SNHWFGTDMLGRDIFARVWKGGRVSIIIGILGTIIEMTIGVIYGGISGYFGGMVDDIMMRIVEILLSVPYLIVVIIISLI
LGKGVISLVIAMTITGWCGMARIIRGQILQIREQEYVLAAQALGARPSRIIKKHLLPNTMGILIVNITLDVPSFIFGEAF
LSYIGLGIQSPNTSWGSLASAAQPNLMFYPYQLFFPALFISLTMLSFNLLGDGLRDALDPKMRQ

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=303, Percent_Identity=41.9141914191419, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI1787054, Length=280, Percent_Identity=36.4285714285714, Blast_Score=211, Evalue=5e-56,
Organism=Escherichia coli, GI1787760, Length=266, Percent_Identity=37.593984962406, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1789889, Length=239, Percent_Identity=34.3096234309623, Blast_Score=157, Evalue=6e-40,
Organism=Escherichia coli, GI1789964, Length=285, Percent_Identity=33.6842105263158, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1788505, Length=246, Percent_Identity=30.4878048780488, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1787549, Length=286, Percent_Identity=27.2727272727273, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33920; Mature: 33789

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEISKDKFEIIGIDKNASNEINRPNITYWQDAWRRLKQNKVAIGSLILLILIALMTIIG
CCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
PYLTPYKYWATDSNIVNMTPNSNHWFGTDMLGRDIFARVWKGGRVSIIIGILGTIIEMTI
HHCCCCEEECCCCCEEEECCCCCCEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
GVIYGGISGYFGGMVDDIMMRIVEILLSVPYLIVVIIISLILGKGVISLVIAMTITGWCG
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MARIIRGQILQIREQEYVLAAQALGARPSRIIKKHLLPNTMGILIVNITLDVPSFIFGEA
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHH
FLSYIGLGIQSPNTSWGSLASAAQPNLMFYPYQLFFPALFISLTMLSFNLLGDGLRDALD
HHHHHHCCCCCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PKMRQ
CCCCC
>Mature Secondary Structure 
AEISKDKFEIIGIDKNASNEINRPNITYWQDAWRRLKQNKVAIGSLILLILIALMTIIG
CCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
PYLTPYKYWATDSNIVNMTPNSNHWFGTDMLGRDIFARVWKGGRVSIIIGILGTIIEMTI
HHCCCCEEECCCCCEEEECCCCCCEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
GVIYGGISGYFGGMVDDIMMRIVEILLSVPYLIVVIIISLILGKGVISLVIAMTITGWCG
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MARIIRGQILQIREQEYVLAAQALGARPSRIIKKHLLPNTMGILIVNITLDVPSFIFGEA
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHH
FLSYIGLGIQSPNTSWGSLASAAQPNLMFYPYQLFFPALFISLTMLSFNLLGDGLRDALD
HHHHHHCCCCCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PKMRQ
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377; 3145906 [H]