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The map label for this gene is kdsB [C]

Identifier: 226950133

GI number: 226950133

Start: 3085866

End: 3086621

Strand: Reverse

Name: kdsB [C]

Synonym: CLM_3087

Alternate gene names: 226950133

Gene position: 3086621-3085866 (Counterclockwise)

Preceding gene: 226950134

Following gene: 226950132

Centisome position: 74.28

GC content: 27.51

Gene sequence:

>756_bases
ATGAAAGTGCTTTGTGTAGTACAAGCTCGTATGGGTTCAGAAAGGTTACCAGGAAAGGTTATAAAACCCATAATGGATAG
GCCTATGATACTTTATACATTAAATAGATTAAATAAAAGTAAATATATAGATGAAATTATTTTAGCTACTTCAATAGAAA
ATAAAGAGCAGCCTCTTGTAGATATAGTAGAAAAAGAAGGGTTTAAAATATTTAGAGGAGAAGAAAATAACGTACTTAAA
AGATACAAAGATACAGTAGATAAATTTGGTGGAGATATAATAATAAGAGTAACAGGAGATTGTCCTTTAATAGACCCTAC
CATTGTGGATAATGTTATAACTTATTTTAAAATGAACAATTTTGATTATATAAGGCTAGATGTGCCAAATAGTTTTATAA
GAGGCTTTGATGTAGAGATATTTTGGAAGGAAAGCCTATATAAAGCTTATAATATAGTTAATAGCTTAGAGGATAACTAT
GAGGAAAAAGGATTTACAAAGGAAAACTATTTTGAACACGTAACATTATATATGTATAATCACAGAGAAGAATTTAAAGT
AGGCTATGTAAAGGGAGAGGATTTTTACAATAAAGAATATAGATTATGTGTAGACACTAAAGAAGATTTTGCCCTTATAA
ATAATATATATGAGCATTTTAAAAATCCATATATAACATCAAAGGAAGTTGTGGAATATCTAGATAAGAATCCTTCTATA
GCAAATATTAATATAAGCATACAACAAAGGATATAA

Upstream 100 bases:

>100_bases
CTTAAATAGGGCTTCTAAGCCTTTTTCTTTTTGCTAAAAACAATATAAAACTCTACGATAATAAAATAGCTTGTTAAGTT
AAGAAAGGGGAAAATATATT

Downstream 100 bases:

>100_bases
GAAATATATAATTTAAACACTAATATAAAAAATATTATTTAATTTTTTTATATTAGTGTTTATAATTAAGAAAAAAATGT
TTTAAACGATAAATATAATA

Product: polysaccharide biosynthesis protein

Products: CMP-3-deoxy-D-manno-octulosonate; Diphosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKVLCVVQARMGSERLPGKVIKPIMDRPMILYTLNRLNKSKYIDEIILATSIENKEQPLVDIVEKEGFKIFRGEENNVLK
RYKDTVDKFGGDIIIRVTGDCPLIDPTIVDNVITYFKMNNFDYIRLDVPNSFIRGFDVEIFWKESLYKAYNIVNSLEDNY
EEKGFTKENYFEHVTLYMYNHREEFKVGYVKGEDFYNKEYRLCVDTKEDFALINNIYEHFKNPYITSKEVVEYLDKNPSI
ANINISIQQRI

Sequences:

>Translated_251_residues
MKVLCVVQARMGSERLPGKVIKPIMDRPMILYTLNRLNKSKYIDEIILATSIENKEQPLVDIVEKEGFKIFRGEENNVLK
RYKDTVDKFGGDIIIRVTGDCPLIDPTIVDNVITYFKMNNFDYIRLDVPNSFIRGFDVEIFWKESLYKAYNIVNSLEDNY
EEKGFTKENYFEHVTLYMYNHREEFKVGYVKGEDFYNKEYRLCVDTKEDFALINNIYEHFKNPYITSKEVVEYLDKNPSI
ANINISIQQRI
>Mature_251_residues
MKVLCVVQARMGSERLPGKVIKPIMDRPMILYTLNRLNKSKYIDEIILATSIENKEQPLVDIVEKEGFKIFRGEENNVLK
RYKDTVDKFGGDIIIRVTGDCPLIDPTIVDNVITYFKMNNFDYIRLDVPNSFIRGFDVEIFWKESLYKAYNIVNSLEDNY
EEKGFTKENYFEHVTLYMYNHREEFKVGYVKGEDFYNKEYRLCVDTKEDFALINNIYEHFKNPYITSKEVVEYLDKNPSI
ANINISIQQRI

Specific function: Activates Kdo (A Required 8-Carbon Sugar) For Incorporation Into Bacterial Lipopolysaccharide In Gram-Negative Bacteria (By Similarity). [C]

COG id: COG1861

COG function: function code M; Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003329 [H]

Pfam domain/function: PF02348 CTP_transf_3 [H]

EC number: 2.7.7.38 [C]

Molecular weight: Translated: 29704; Mature: 29704

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLCVVQARMGSERLPGKVIKPIMDRPMILYTLNRLNKSKYIDEIILATSIENKEQPLV
CEEEEEEEECCCCCCCCHHHHHHHHCCCEEEEHHHHCCHHHHHHHHHHHHCCCCCCCHHH
DIVEKEGFKIFRGEENNVLKRYKDTVDKFGGDIIIRVTGDCPLIDPTIVDNVITYFKMNN
HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHEEECC
FDYIRLDVPNSFIRGFDVEIFWKESLYKAYNIVNSLEDNYEEKGFTKENYFEHVTLYMYN
CCEEEEECCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEEEEE
HREEFKVGYVKGEDFYNKEYRLCVDTKEDFALINNIYEHFKNPYITSKEVVEYLDKNPSI
CCCEEEEEEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCE
ANINISIQQRI
EEEEEEEEECC
>Mature Secondary Structure
MKVLCVVQARMGSERLPGKVIKPIMDRPMILYTLNRLNKSKYIDEIILATSIENKEQPLV
CEEEEEEEECCCCCCCCHHHHHHHHCCCEEEEHHHHCCHHHHHHHHHHHHCCCCCCCHHH
DIVEKEGFKIFRGEENNVLKRYKDTVDKFGGDIIIRVTGDCPLIDPTIVDNVITYFKMNN
HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHEEECC
FDYIRLDVPNSFIRGFDVEIFWKESLYKAYNIVNSLEDNYEEKGFTKENYFEHVTLYMYN
CCEEEEECCHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEEEEE
HREEFKVGYVKGEDFYNKEYRLCVDTKEDFALINNIYEHFKNPYITSKEVVEYLDKNPSI
CCCEEEEEEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCE
ANINISIQQRI
EEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: GSH [C]

Metal ions: Ba2+; Ca2+; Cd2+; Co2+; Mg2+; Mn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): 0.8 {3-deoxy-manno-octulosonate}} 0.39 {3-deoxy-manno-octulosonate}} 0.29 {3-deoxy-manno-octulosonate}} 0.34 {dCTP}} 0.88 {UTP}} 0.22 {CTP}} 0.2 {CTP}} [C]

Substrates: CTP; 3-Deoxy-D-manno-2-octulosonate [C]

Specific reaction: CTP + 3-Deoxy-D-manno-2-octulosonate --> CMP-3-deoxy-D-manno-octulosonate + Diphosphate [C]

General reaction: Nucleotidyl group transfer [C]

Inhibitor: 2,6-Anhydro-3-deoxy-D-glycero-D-talo-octanoate; Diphosphate; Hg2+; 3-deoxy-manno-octulosonate 8-phosphate; N-acetyl neuraminate [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]