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The map label for this gene is ywqC [H]

Identifier: 226950100

GI number: 226950100

Start: 3051788

End: 3052471

Strand: Reverse

Name: ywqC [H]

Synonym: CLM_3053

Alternate gene names: 226950100

Gene position: 3052471-3051788 (Counterclockwise)

Preceding gene: 226950101

Following gene: 226950099

Centisome position: 73.46

GC content: 27.49

Gene sequence:

>684_bases
ATGAATGAAGAAGTAACCTTAGATTTACAGGAGATTCTTAATGTATTAAAAAAGAAAAAAAAGATGATTTTACTAACAAC
TTTATTATTTGGAATAATATCTGCAGCTTTAAGTTTTTTCATTATTCCACCCACCTATGAAATAAAGGCTAGTGTAGTTA
TAGGTAAGACTTTAGATGAAAAAAATGAAAATAAAAATGATTATAATGATGTTATGATGTATCAAAAGTTAGTTAAAACC
TATGCCCAAATAGCTAGTTCTAGAACTTTAGCAGAAAATGTAGCAGCTAAAACTGGAGAATTAAAACCGGAGGAGCTACA
AGAAGAATTAGAAGTAACACCTCAACAAGATACCCAAATTTTAGATTTAAAAATAGAAAATAAAGATGCAGCATATGCAC
AAAAAATACTTACCATAGTTTGTGATGAATTTATAGCTGAAAGTAAAAAAATATATCCTAATAACACTATAGAATTATTA
GATAAGCCTGTAATACCAGAAAAGCCTATAAAACCAAGAAAACTATTAAATATAGCTATAGCTTTATTTATGGGACTTTT
ATTGTCTGCAGGTAGGGCTTTTATACAAGAATATATGGACAAAACTATAAAAACAGAAAACGATATAGACAAATATTTAG
AACTTCCAGTAATAGCTGTAATACCTAAAATAAGGAGAGAATAA

Upstream 100 bases:

>100_bases
TTTAATGAGGAAAAAACTATAGATCAAATGCACAAATATATATTTGAAGATATAAAACCTAATTAACTTAGTATACTTAG
ATATGGAGGAAAGTCTTAAG

Downstream 100 bases:

>100_bases
TTATATGATAGATATTCACAGTCATATAATGCCATCTGTAGATGATGGGGCAAATGATTTAGATTATTCTTTAAAGATGC
TTAAAATGGCAGAAGAAAGT

Product: capsular polysaccharide biosynthsis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MNEEVTLDLQEILNVLKKKKKMILLTTLLFGIISAALSFFIIPPTYEIKASVVIGKTLDEKNENKNDYNDVMMYQKLVKT
YAQIASSRTLAENVAAKTGELKPEELQEELEVTPQQDTQILDLKIENKDAAYAQKILTIVCDEFIAESKKIYPNNTIELL
DKPVIPEKPIKPRKLLNIAIALFMGLLLSAGRAFIQEYMDKTIKTENDIDKYLELPVIAVIPKIRRE

Sequences:

>Translated_227_residues
MNEEVTLDLQEILNVLKKKKKMILLTTLLFGIISAALSFFIIPPTYEIKASVVIGKTLDEKNENKNDYNDVMMYQKLVKT
YAQIASSRTLAENVAAKTGELKPEELQEELEVTPQQDTQILDLKIENKDAAYAQKILTIVCDEFIAESKKIYPNNTIELL
DKPVIPEKPIKPRKLLNIAIALFMGLLLSAGRAFIQEYMDKTIKTENDIDKYLELPVIAVIPKIRRE
>Mature_227_residues
MNEEVTLDLQEILNVLKKKKKMILLTTLLFGIISAALSFFIIPPTYEIKASVVIGKTLDEKNENKNDYNDVMMYQKLVKT
YAQIASSRTLAENVAAKTGELKPEELQEELEVTPQQDTQILDLKIENKDAAYAQKILTIVCDEFIAESKKIYPNNTIELL
DKPVIPEKPIKPRKLLNIAIALFMGLLLSAGRAFIQEYMDKTIKTENDIDKYLELPVIAVIPKIRRE

Specific function: Required for YwqD kinase activity. May bring YwqD and its substrates into contact. Probably involved in the regulation of capsular polysaccharide biosynthesis [H]

COG id: COG3944

COG function: function code M; Capsular polysaccharide biosynthesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpsC/CapA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003856 [H]

Pfam domain/function: PF02706 Wzz [H]

EC number: NA

Molecular weight: Translated: 25842; Mature: 25842

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEEVTLDLQEILNVLKKKKKMILLTTLLFGIISAALSFFIIPPTYEIKASVVIGKTLDE
CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEECCHHHC
KNENKNDYNDVMMYQKLVKTYAQIASSRTLAENVAAKTGELKPEELQEELEVTPQQDTQI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEE
LDLKIENKDAAYAQKILTIVCDEFIAESKKIYPNNTIELLDKPVIPEKPIKPRKLLNIAI
EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHH
ALFMGLLLSAGRAFIQEYMDKTIKTENDIDKYLELPVIAVIPKIRRE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNEEVTLDLQEILNVLKKKKKMILLTTLLFGIISAALSFFIIPPTYEIKASVVIGKTLDE
CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEEECCHHHC
KNENKNDYNDVMMYQKLVKTYAQIASSRTLAENVAAKTGELKPEELQEELEVTPQQDTQI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEE
LDLKIENKDAAYAQKILTIVCDEFIAESKKIYPNNTIELLDKPVIPEKPIKPRKLLNIAI
EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHH
ALFMGLLLSAGRAFIQEYMDKTIKTENDIDKYLELPVIAVIPKIRRE
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]