Click here to switch to the map view.

The map label for this gene is lytR [H]

Identifier: 226950101

GI number: 226950101

Start: 3052506

End: 3053468

Strand: Reverse

Name: lytR [H]

Synonym: CLM_3054

Alternate gene names: 226950101

Gene position: 3053468-3052506 (Counterclockwise)

Preceding gene: 226950102

Following gene: 226950100

Centisome position: 73.48

GC content: 30.11

Gene sequence:

>963_bases
ATGGGGAGTAAAAAAAAGAAATGGATATTGTCTATAGTGGCAGTAATTATTCTTATATCAGTGGTTAGCGCATTATATGT
TTATAGTAAGTTAGAATCCGTTAAAAAAGTACCTATATCTAAAGATGATAAGGAATTAAAAATAGATAAAAAAGCAGAGC
CATATGGAGATGATGTTATAAATATAGCATTTTTTGGTTTGGATAGAAGAAAAAAAGAGGAACCTTCAAGATCTGATGCT
GTGATGATACTTTCTTTAGATAAAAAGCATAAAAAAGTGAAACTATCGTCTATAATGAGGGATTCCTATGTAGATATAGA
GGGTCATGGAAAAACAAAATTGAATCATGCCTATGCTTATGGGGGGCCAGAGTTAGCTATAAAGACTATAAATTCTAATT
TTAAATTAAATATTAGGGATTTTGTGGCAGTAGATTTTTATGGATTAGAAAATATAATAGATACTGTTGGTGGGGTAGAA
ATACCTGTTAGATCTGATGAAATAAAATATATAAATAGCTATATGCAGGGAACTGCAAAAGTTGAAAATAAGGTTATACA
AGAAGTTCAAAATCCAGGACTACAAAATTTAAATGGTATGCAAGCGGTGGCTTATGCCAGAATAAGGTATACCAGTGGTG
GAGACTATGAAAGAACAGAAAGACAAAGAACCGTTTTAACAGCTATCATGAATAAAATAAAAAAATTAGGACCTACAGAG
TTTCCTAAAGTAGTAAGTTCTTTACTTCCTAATGTGGAAAGCAGTCTTTCTTCTACAGAAATAATGAAAATGGGTACTTC
AGCCTTTGCTTTAGGTATGGACAATGTAGAGCAACAAAGATTTCCTTTAGATAATTATTGTGAAGGAAAACTTATAGATG
GTATTTATTATTTATTGTTTAATGAGGAAAAAACTATAGATCAAATGCACAAATATATATTTGAAGATATAAAACCTAAT
TAA

Upstream 100 bases:

>100_bases
ATATATATAAACCTTGGTATATTTTACTGTTTTGTAAAAATTAATTTTTTTATAATAATATTATTGCTTTGTGTAACCAT
ATTTTGAGAGGAGATATTGT

Downstream 100 bases:

>100_bases
CTTAGTATACTTAGATATGGAGGAAAGTCTTAAGATGAATGAAGAAGTAACCTTAGATTTACAGGAGATTCTTAATGTAT
TAAAAAAGAAAAAAAAGATG

Product: cell envelope-like transcriptional attenuator domain-containing protein

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MGSKKKKWILSIVAVIILISVVSALYVYSKLESVKKVPISKDDKELKIDKKAEPYGDDVINIAFFGLDRRKKEEPSRSDA
VMILSLDKKHKKVKLSSIMRDSYVDIEGHGKTKLNHAYAYGGPELAIKTINSNFKLNIRDFVAVDFYGLENIIDTVGGVE
IPVRSDEIKYINSYMQGTAKVENKVIQEVQNPGLQNLNGMQAVAYARIRYTSGGDYERTERQRTVLTAIMNKIKKLGPTE
FPKVVSSLLPNVESSLSSTEIMKMGTSAFALGMDNVEQQRFPLDNYCEGKLIDGIYYLLFNEEKTIDQMHKYIFEDIKPN

Sequences:

>Translated_320_residues
MGSKKKKWILSIVAVIILISVVSALYVYSKLESVKKVPISKDDKELKIDKKAEPYGDDVINIAFFGLDRRKKEEPSRSDA
VMILSLDKKHKKVKLSSIMRDSYVDIEGHGKTKLNHAYAYGGPELAIKTINSNFKLNIRDFVAVDFYGLENIIDTVGGVE
IPVRSDEIKYINSYMQGTAKVENKVIQEVQNPGLQNLNGMQAVAYARIRYTSGGDYERTERQRTVLTAIMNKIKKLGPTE
FPKVVSSLLPNVESSLSSTEIMKMGTSAFALGMDNVEQQRFPLDNYCEGKLIDGIYYLLFNEEKTIDQMHKYIFEDIKPN
>Mature_319_residues
GSKKKKWILSIVAVIILISVVSALYVYSKLESVKKVPISKDDKELKIDKKAEPYGDDVINIAFFGLDRRKKEEPSRSDAV
MILSLDKKHKKVKLSSIMRDSYVDIEGHGKTKLNHAYAYGGPELAIKTINSNFKLNIRDFVAVDFYGLENIIDTVGGVEI
PVRSDEIKYINSYMQGTAKVENKVIQEVQNPGLQNLNGMQAVAYARIRYTSGGDYERTERQRTVLTAIMNKIKKLGPTEF
PKVVSSLLPNVESSLSSTEIMKMGTSAFALGMDNVEQQRFPLDNYCEGKLIDGIYYLLFNEEKTIDQMHKYIFEDIKPN

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 36198; Mature: 36067

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSKKKKWILSIVAVIILISVVSALYVYSKLESVKKVPISKDDKELKIDKKAEPYGDDVI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEE
NIAFFGLDRRKKEEPSRSDAVMILSLDKKHKKVKLSSIMRDSYVDIEGHGKTKLNHAYAY
EEEEECCCCHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCEEECCCCCCCCCCEEEC
GGPELAIKTINSNFKLNIRDFVAVDFYGLENIIDTVGGVEIPVRSDEIKYINSYMQGTAK
CCCEEEEEEECCCEEEEEHHEEEEEHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHH
VENKVIQEVQNPGLQNLNGMQAVAYARIRYTSGGDYERTERQRTVLTAIMNKIKKLGPTE
HHHHHHHHHHCCCCCCCCCHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
FPKVVSSLLPNVESSLSSTEIMKMGTSAFALGMDNVEQQRFPLDNYCEGKLIDGIYYLLF
HHHHHHHHCCCHHHHHHHHHHHHHCCHHEEECCCCHHHHCCCCCCCCCCEEECEEEEEEE
NEEKTIDQMHKYIFEDIKPN
CCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GSKKKKWILSIVAVIILISVVSALYVYSKLESVKKVPISKDDKELKIDKKAEPYGDDVI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEE
NIAFFGLDRRKKEEPSRSDAVMILSLDKKHKKVKLSSIMRDSYVDIEGHGKTKLNHAYAY
EEEEECCCCHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCEEECCCCCCCCCCEEEC
GGPELAIKTINSNFKLNIRDFVAVDFYGLENIIDTVGGVEIPVRSDEIKYINSYMQGTAK
CCCEEEEEEECCCEEEEEHHEEEEEHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHH
VENKVIQEVQNPGLQNLNGMQAVAYARIRYTSGGDYERTERQRTVLTAIMNKIKKLGPTE
HHHHHHHHHHCCCCCCCCCHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
FPKVVSSLLPNVESSLSSTEIMKMGTSAFALGMDNVEQQRFPLDNYCEGKLIDGIYYLLF
HHHHHHHHCCCHHHHHHHHHHHHHCCHHEEECCCCHHHHCCCCCCCCCCEEECEEEEEEE
NEEKTIDQMHKYIFEDIKPN
CCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA