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The map label for this gene is yrvN [H]

Identifier: 226949925

GI number: 226949925

Start: 2881678

End: 2882928

Strand: Reverse

Name: yrvN [H]

Synonym: CLM_2877

Alternate gene names: 226949925

Gene position: 2882928-2881678 (Counterclockwise)

Preceding gene: 226949926

Following gene: 226949924

Centisome position: 69.38

GC content: 28.14

Gene sequence:

>1251_bases
ATGAGGCCTTTAGCAGATTTAATGAGACCTAAGAAATTAGAAGATTTTGTAGGACAAAAGCATATACTATCTGAGAATAA
ACCTTTATATAATTTAATGAAAAATAAATCAATATGTAATTCTATATTTTATGGCCCACCAGGTACAGGTAAAACTACTT
TAGCTAATATTATGGCAAATTATGTGGATAAGAAATTTTATAGATTAAATGCTACTACAGCATCTATTAAGGATATTCAA
GAAATAACTTCTAGCATAAACAGTTTGTTAAATTATAGTGGTGTTGTATTGTATATAGATGAGCTGCAGCATTTTACAAA
AAAACAACAACAGGCTTTATTAGAGTTTATAGAGGATGGAAGAGTGATATTAATAGCTAGCACTACTGAAAATCCTTATT
TTGTTATACATAAAGCAATTTTAAGTAGATGCAATATATTTCAATTTAAGCCCCTTAATAGAGAGGATATTATTTTAGGC
TTAGAAAAGGCCATAAACAAATTAATAGATAAGGGTATAAATATAAAATATACTTTTGAATCTTTAGAATATATAAGCGA
GATATGTCAAGGAGATTATAGAAAGGCCTATAATATTTTAGAACTAGCTGTAAATTCTCACTGTGGGTTTAATATAGAAA
TTAATTTGGACTATATAGAGTCTTTGGCACAATCTAACATTAGAGCAGATGCTACAGGAGATGAATATTATAACATTTTA
AGTGCTTTCCAAAAAAGTATAAGAGGAAGTGACGCTGACGCAGCAGTTCATTATTTAGCAAGACTTATAAAAAGTGGAGA
TATTACATCTATTACAAGAAGGTTATCAGTAATGGCAGCAGAGGATATTGGATTAGCCTATCCTAATGCATTAACTATTG
TAAATTCTGGTATAGAGTTAGCTTTAAAAGTAGGATTTCCTGAGGCGCAAATTATTTTATCTGAAATCACAATATACTTA
GCTACTTTGCCAAAGTCAAATAGTGCATACATAGCTATAAAAAATGCTACGAAAGATTTAGAAAATATTAATTTTGGAGA
TGTGCCAGATCATCTTAAAGATTCTCATTATTATGGTGCTAAAAATTTAGGTATAGGGGGATATAAATATCCTCATGATT
TTAATAATCATTATGTCAGTCAGGAATACTTACCTAAAGAGTTAAAGGATAAAGTATATTATATAGCACAACATAATAAA
TATGAAGAAAATCTAAAAAAATATTGGGAAAATATTAAAAAATTTAAATAA

Upstream 100 bases:

>100_bases
TTAATAGATGAAAAGTTTTATATGAATTAAGTTTATAACTTGATAAAACAAGGGCTTTAACTTAAAATGAGAGTTAAAGT
CTTTTTAGTGAGGTGAAATT

Downstream 100 bases:

>100_bases
AGAAATTAATATTTTAGTATAGTCCTTTATAATTAAGACTATACTTTTTGTATTAAAAAATAATTATTATATATAATAGG
ATTATAATTATAATAGCTTT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MRPLADLMRPKKLEDFVGQKHILSENKPLYNLMKNKSICNSIFYGPPGTGKTTLANIMANYVDKKFYRLNATTASIKDIQ
EITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILG
LEKAINKLIDKGINIKYTFESLEYISEICQGDYRKAYNILELAVNSHCGFNIEINLDYIESLAQSNIRADATGDEYYNIL
SAFQKSIRGSDADAAVHYLARLIKSGDITSITRRLSVMAAEDIGLAYPNALTIVNSGIELALKVGFPEAQIILSEITIYL
ATLPKSNSAYIAIKNATKDLENINFGDVPDHLKDSHYYGAKNLGIGGYKYPHDFNNHYVSQEYLPKELKDKVYYIAQHNK
YEENLKKYWENIKKFK

Sequences:

>Translated_416_residues
MRPLADLMRPKKLEDFVGQKHILSENKPLYNLMKNKSICNSIFYGPPGTGKTTLANIMANYVDKKFYRLNATTASIKDIQ
EITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILG
LEKAINKLIDKGINIKYTFESLEYISEICQGDYRKAYNILELAVNSHCGFNIEINLDYIESLAQSNIRADATGDEYYNIL
SAFQKSIRGSDADAAVHYLARLIKSGDITSITRRLSVMAAEDIGLAYPNALTIVNSGIELALKVGFPEAQIILSEITIYL
ATLPKSNSAYIAIKNATKDLENINFGDVPDHLKDSHYYGAKNLGIGGYKYPHDFNNHYVSQEYLPKELKDKVYYIAQHNK
YEENLKKYWENIKKFK
>Mature_416_residues
MRPLADLMRPKKLEDFVGQKHILSENKPLYNLMKNKSICNSIFYGPPGTGKTTLANIMANYVDKKFYRLNATTASIKDIQ
EITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILG
LEKAINKLIDKGINIKYTFESLEYISEICQGDYRKAYNILELAVNSHCGFNIEINLDYIESLAQSNIRADATGDEYYNIL
SAFQKSIRGSDADAAVHYLARLIKSGDITSITRRLSVMAAEDIGLAYPNALTIVNSGIELALKVGFPEAQIILSEITIYL
ATLPKSNSAYIAIKNATKDLENINFGDVPDHLKDSHYYGAKNLGIGGYKYPHDFNNHYVSQEYLPKELKDKVYYIAQHNK
YEENLKKYWENIKKFK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=438, Percent_Identity=34.703196347032, Blast_Score=232, Evalue=5e-61,
Organism=Homo sapiens, GI18426904, Length=438, Percent_Identity=32.1917808219178, Blast_Score=196, Evalue=3e-50,
Organism=Escherichia coli, GI1787119, Length=414, Percent_Identity=35.5072463768116, Blast_Score=253, Evalue=1e-68,
Organism=Caenorhabditis elegans, GI71986063, Length=224, Percent_Identity=30.3571428571429, Blast_Score=70, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=426, Percent_Identity=34.037558685446, Blast_Score=229, Evalue=7e-61,
Organism=Saccharomyces cerevisiae, GI6322528, Length=293, Percent_Identity=26.6211604095563, Blast_Score=67, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6324039, Length=221, Percent_Identity=27.6018099547511, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324478, Length=222, Percent_Identity=27.9279279279279, Blast_Score=63, Evalue=7e-11,
Organism=Drosophila melanogaster, GI19921076, Length=225, Percent_Identity=27.1111111111111, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 47324; Mature: 47324

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLADLMRPKKLEDFVGQKHILSENKPLYNLMKNKSICNSIFYGPPGTGKTTLANIMAN
CCCHHHHHCCHHHHHHHCCHHHHCCCCHHHHHHHCHHHHHHCCCCCCCCCHHHHHHHHHH
YVDKKFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDG
HHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCC
RVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDKGINIKYTFE
CEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEHH
SLEYISEICQGDYRKAYNILELAVNSHCGFNIEINLDYIESLAQSNIRADATGDEYYNIL
HHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCCCCCHHHHHHH
SAFQKSIRGSDADAAVHYLARLIKSGDITSITRRLSVMAAEDIGLAYPNALTIVNSGIEL
HHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEE
ALKVGFPEAQIILSEITIYLATLPKSNSAYIAIKNATKDLENINFGDVPDHLKDSHYYGA
EEEECCCHHHHHHHHHHHHEEECCCCCCCEEEEECCCHHHHCCCCCCCCCHHCCCCCCCC
KNLGIGGYKYPHDFNNHYVSQEYLPKELKDKVYYIAQHNKYEENLKKYWENIKKFK
CCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHEEEEECCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRPLADLMRPKKLEDFVGQKHILSENKPLYNLMKNKSICNSIFYGPPGTGKTTLANIMAN
CCCHHHHHCCHHHHHHHCCHHHHCCCCHHHHHHHCHHHHHHCCCCCCCCCHHHHHHHHHH
YVDKKFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDG
HHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCC
RVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDKGINIKYTFE
CEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEHH
SLEYISEICQGDYRKAYNILELAVNSHCGFNIEINLDYIESLAQSNIRADATGDEYYNIL
HHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCCCCCHHHHHHH
SAFQKSIRGSDADAAVHYLARLIKSGDITSITRRLSVMAAEDIGLAYPNALTIVNSGIEL
HHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEE
ALKVGFPEAQIILSEITIYLATLPKSNSAYIAIKNATKDLENINFGDVPDHLKDSHYYGA
EEEECCCHHHHHHHHHHHHEEECCCCCCCEEEEECCCHHHHCCCCCCCCCHHCCCCCCCC
KNLGIGGYKYPHDFNNHYVSQEYLPKELKDKVYYIAQHNKYEENLKKYWENIKKFK
CCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHEEEEECCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]