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The map label for this gene is rnfC [H]

Identifier: 226949834

GI number: 226949834

Start: 2793639

End: 2794943

Strand: Reverse

Name: rnfC [H]

Synonym: CLM_2780

Alternate gene names: 226949834

Gene position: 2794943-2793639 (Counterclockwise)

Preceding gene: 226949837

Following gene: 226949833

Centisome position: 67.26

GC content: 33.49

Gene sequence:

>1305_bases
ATGGAAAAAATGTACAAGTTTCCTTTAAAGATGCATGTAGGAGCACCAGATGTGGCATGTGTTAAAGAAGGACAAGAAGT
TAAAAGAGGAGAATGTATAGCTGAGCCTAATGGATTGGGAGCTAAAATACATACAAGTGTATCTGGTATAGTTGAGAAAA
TTACAGATGCAGAAATAATAATAAAAGCAGATGAAAATGGCTCAAAGGACTTTGTTAAAATCAAAGAATGTGACAATATT
CTAGAAACTATTGCTGAAGCAGGTATAGTTGGAGCTGGTGGAGCTGGATTCCCAACACATATAAAATTAAAAGCAGATAT
ACCAGATGGATACGTTATAGCAAACTGTGTAGAATGCGAACCAGCTTTGCATCATAATATAGCATTTATAGAAAAAGAGC
CTGATACAATAATTAAAGGTTTAAGATATGCTATGAAAGCAACTAATGCTCCAAAGGGATACATAGCAATAAAAGGTAAG
CACGAGAATGCTATAAAAATATTAAAAGATCATTTAAAAGGAGCTTCTGATATAGAAGTAAAAGAGCTTCAAGATATATA
TCCAATGGGAGAAGAAAGAGCTATAATTCATGCTATATTAGGGAAATGGTTAGAACCAACTCAGCTTCCATTAGAAGCAA
AATGTGTTGTAATTAATGGAGAAACTTTAGCTAATATAACAAGAGCAGTAGAAGATAGAAAGCCTGTTATAGACAAAGAT
ATAACAATAATAGGAAAATTAAAAACAGGTAATAAGCCTAATGTATTACTTGATGTACCAGTAGGCACACCAATACACGA
TTTAATAGAAGAGTTCGGTGGAATAGATGGAGAATTTGGAGAAGTAGTAATAGGGGGACCATATACAGGCAAGGCTGGAG
ATATAAAAGAGTCTGTAGTGACTAAAATGTCAGGTGGAGCAATAGTTACAATACAACTACCAGAATACAAAGGACCATTA
GGATTATTAGTATGTGCTTGTGGAGCAAATGAAGAAAGATTGAGAGATATAGCTTCTAAAATGAAAGCAGAAGTAGTAGG
AGTTACTAAATGTAAGAATGTAGAAGAAATAAGAGGAGCAAATAAATGTAAAACTCCAGGAGATTGTCCAGGGCAGGTTG
CAGGAATAATGAAATTAAAGAAAGATGGAGCAAAAAGAATACTAATATCAAATTGTAGCGATTGTTCAAATACAGTTATG
TGCTGCGCTCCAAATTTAGGAATCCCAGTATATCATCATACAGATCATGTATTTAGAACAATAGATCATACATTAACAAG
AAGACTTCCTATAGATAAAAAATAA

Upstream 100 bases:

>100_bases
CACCCTATAGAATAATTTTATATATGCAGTTTCTAGTAGTAAAACTGTCATTTTGTTTTTATAATGAATATTGTAAAGAA
AAAATACAGGGGGTAGTGAC

Downstream 100 bases:

>100_bases
GTATATCTTATTAAATATATTGTAAGGAGATGGGTTAACATGTCAATGTCAGCAGAACATGCAGAAGAGCTAAAAAATGA
ACCAGCAGTAGTTTGTTGTA

Product: putative electron transport protein

Products: NA

Alternate protein names: Nitrogen fixation protein rnfC [H]

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MEKMYKFPLKMHVGAPDVACVKEGQEVKRGECIAEPNGLGAKIHTSVSGIVEKITDAEIIIKADENGSKDFVKIKECDNI
LETIAEAGIVGAGGAGFPTHIKLKADIPDGYVIANCVECEPALHHNIAFIEKEPDTIIKGLRYAMKATNAPKGYIAIKGK
HENAIKILKDHLKGASDIEVKELQDIYPMGEERAIIHAILGKWLEPTQLPLEAKCVVINGETLANITRAVEDRKPVIDKD
ITIIGKLKTGNKPNVLLDVPVGTPIHDLIEEFGGIDGEFGEVVIGGPYTGKAGDIKESVVTKMSGGAIVTIQLPEYKGPL
GLLVCACGANEERLRDIASKMKAEVVGVTKCKNVEEIRGANKCKTPGDCPGQVAGIMKLKKDGAKRILISNCSDCSNTVM
CCAPNLGIPVYHHTDHVFRTIDHTLTRRLPIDKK

Sequences:

>Translated_434_residues
MEKMYKFPLKMHVGAPDVACVKEGQEVKRGECIAEPNGLGAKIHTSVSGIVEKITDAEIIIKADENGSKDFVKIKECDNI
LETIAEAGIVGAGGAGFPTHIKLKADIPDGYVIANCVECEPALHHNIAFIEKEPDTIIKGLRYAMKATNAPKGYIAIKGK
HENAIKILKDHLKGASDIEVKELQDIYPMGEERAIIHAILGKWLEPTQLPLEAKCVVINGETLANITRAVEDRKPVIDKD
ITIIGKLKTGNKPNVLLDVPVGTPIHDLIEEFGGIDGEFGEVVIGGPYTGKAGDIKESVVTKMSGGAIVTIQLPEYKGPL
GLLVCACGANEERLRDIASKMKAEVVGVTKCKNVEEIRGANKCKTPGDCPGQVAGIMKLKKDGAKRILISNCSDCSNTVM
CCAPNLGIPVYHHTDHVFRTIDHTLTRRLPIDKK
>Mature_434_residues
MEKMYKFPLKMHVGAPDVACVKEGQEVKRGECIAEPNGLGAKIHTSVSGIVEKITDAEIIIKADENGSKDFVKIKECDNI
LETIAEAGIVGAGGAGFPTHIKLKADIPDGYVIANCVECEPALHHNIAFIEKEPDTIIKGLRYAMKATNAPKGYIAIKGK
HENAIKILKDHLKGASDIEVKELQDIYPMGEERAIIHAILGKWLEPTQLPLEAKCVVINGETLANITRAVEDRKPVIDKD
ITIIGKLKTGNKPNVLLDVPVGTPIHDLIEEFGGIDGEFGEVVIGGPYTGKAGDIKESVVTKMSGGAIVTIQLPEYKGPL
GLLVCACGANEERLRDIASKMKAEVVGVTKCKNVEEIRGANKCKTPGDCPGQVAGIMKLKKDGAKRILISNCSDCSNTVM
CCAPNLGIPVYHHTDHVFRTIDHTLTRRLPIDKK

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=312, Percent_Identity=25.6410256410256, Blast_Score=98, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538 [H]

Pfam domain/function: PF01512 Complex1_51K [H]

EC number: NA

Molecular weight: Translated: 46840; Mature: 46840

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKMYKFPLKMHVGAPDVACVKEGQEVKRGECIAEPNGLGAKIHTSVSGIVEKITDAEII
CCCCEECCEEEECCCCCHHHHHCCCHHHCCCEECCCCCCCEEEEHHHHHHHHHHCCCEEE
IKADENGSKDFVKIKECDNILETIAEAGIVGAGGAGFPTHIKLKADIPDGYVIANCVECE
EEECCCCCCCEEEHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEECCCCCEEEEEEEECC
PALHHNIAFIEKEPDTIIKGLRYAMKATNAPKGYIAIKGKHENAIKILKDHLKGASDIEV
CHHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCH
KELQDIYPMGEERAIIHAILGKWLEPTQLPLEAKCVVINGETLANITRAVEDRKPVIDKD
HHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCC
ITIIGKLKTGNKPNVLLDVPVGTPIHDLIEEFGGIDGEFGEVVIGGPYTGKAGDIKESVV
EEEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHHHHHH
TKMSGGAIVTIQLPEYKGPLGLLVCACGANEERLRDIASKMKAEVVGVTKCKNVEEIRGA
HHCCCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHEEHHHCCCHHHHCCC
NKCKTPGDCPGQVAGIMKLKKDGAKRILISNCSDCSNTVMCCAPNLGIPVYHHTDHVFRT
CCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCEEEECCHHHHHH
IDHTLTRRLPIDKK
HHHHHHHCCCCCCC
>Mature Secondary Structure
MEKMYKFPLKMHVGAPDVACVKEGQEVKRGECIAEPNGLGAKIHTSVSGIVEKITDAEII
CCCCEECCEEEECCCCCHHHHHCCCHHHCCCEECCCCCCCEEEEHHHHHHHHHHCCCEEE
IKADENGSKDFVKIKECDNILETIAEAGIVGAGGAGFPTHIKLKADIPDGYVIANCVECE
EEECCCCCCCEEEHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEECCCCCEEEEEEEECC
PALHHNIAFIEKEPDTIIKGLRYAMKATNAPKGYIAIKGKHENAIKILKDHLKGASDIEV
CHHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCH
KELQDIYPMGEERAIIHAILGKWLEPTQLPLEAKCVVINGETLANITRAVEDRKPVIDKD
HHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCC
ITIIGKLKTGNKPNVLLDVPVGTPIHDLIEEFGGIDGEFGEVVIGGPYTGKAGDIKESVV
EEEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCHHHHHH
TKMSGGAIVTIQLPEYKGPLGLLVCACGANEERLRDIASKMKAEVVGVTKCKNVEEIRGA
HHCCCCEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHEEHHHCCCHHHHCCC
NKCKTPGDCPGQVAGIMKLKKDGAKRILISNCSDCSNTVMCCAPNLGIPVYHHTDHVFRT
CCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCEEEECCHHHHHH
IDHTLTRRLPIDKK
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA