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The map label for this gene is prdA [H]

Identifier: 226949833

GI number: 226949833

Start: 2792937

End: 2793599

Strand: Reverse

Name: prdA [H]

Synonym: CLM_2779

Alternate gene names: 226949833

Gene position: 2793599-2792937 (Counterclockwise)

Preceding gene: 226949834

Following gene: 226949832

Centisome position: 67.23

GC content: 32.13

Gene sequence:

>663_bases
ATGTCAATGTCAGCAGAACATGCAGAAGAGCTAAAAAATGAACCAGCAGTAGTTTGTTGTAGAACGGAAGAAGGCACTAT
ATTGTCTGCAGACAACTTAGAAGATCCAAATATATTTCCAGATATGGTGGATTCAGGCTTATTAAATATACCAGGAGACT
GTTTAAAGGTAGGAGAAGTAATAGGAGCTAAACTATTAAAAACCATAGATTCATTAACACCATTAGCTAAAGATATAGTA
GAAGGAGCTAAATCTTTAGATAGAGATGTAAGATCAAAATCCGAAATACAAATAGAATCACCAGAGGAAAAAGCTATCTT
AAAAAATAATTTAAAAGCTGGAGATATTATAAAAGTAGAAGACCTAGAAAATCCCATGCATTTTGCAAAACTTCAGGATT
CTTTATTAATAAAATTGGATGAAAAGGTTTTAACTAGAAGGGAAGTAGTAGGTGCGAAATTAACTGAAGATGCTCCTGCT
ATATCAGGTGTAACAGCTTCTATGTTAGAGGGATTTGAAGAAAAAGCTTTAGAAATAACACAAGATTCTAAAGAAGTAGA
TTTCAATTCAGTTATTCCTTTGAATGGCAATAGGGGATTCTTAAGATTAAAAATAGAAGAAGGTACAGGTATTTATATAG
AGATACCTTTTGCACAAGTATAA

Upstream 100 bases:

>100_bases
TCATGTATTTAGAACAATAGATCATACATTAACAAGAAGACTTCCTATAGATAAAAAATAAGTATATCTTATTAAATATA
TTGTAAGGAGATGGGTTAAC

Downstream 100 bases:

>100_bases
TTAATTAAATAAAATTATATTAAACAGGGAAATTCAATGATATAAAAATATCATTGAATTTCCTTCTTTATTTTTATATT
AGAAATAATTAAAAGATAGA

Product: hypothetical protein

Products: NA

Alternate protein names: D-proline reductase 45 kDa subunit; D-proline reductase 23 kDa subunit [H]

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MSMSAEHAEELKNEPAVVCCRTEEGTILSADNLEDPNIFPDMVDSGLLNIPGDCLKVGEVIGAKLLKTIDSLTPLAKDIV
EGAKSLDRDVRSKSEIQIESPEEKAILKNNLKAGDIIKVEDLENPMHFAKLQDSLLIKLDEKVLTRREVVGAKLTEDAPA
ISGVTASMLEGFEEKALEITQDSKEVDFNSVIPLNGNRGFLRLKIEEGTGIYIEIPFAQV

Sequences:

>Translated_220_residues
MSMSAEHAEELKNEPAVVCCRTEEGTILSADNLEDPNIFPDMVDSGLLNIPGDCLKVGEVIGAKLLKTIDSLTPLAKDIV
EGAKSLDRDVRSKSEIQIESPEEKAILKNNLKAGDIIKVEDLENPMHFAKLQDSLLIKLDEKVLTRREVVGAKLTEDAPA
ISGVTASMLEGFEEKALEITQDSKEVDFNSVIPLNGNRGFLRLKIEEGTGIYIEIPFAQV
>Mature_219_residues
SMSAEHAEELKNEPAVVCCRTEEGTILSADNLEDPNIFPDMVDSGLLNIPGDCLKVGEVIGAKLLKTIDSLTPLAKDIVE
GAKSLDRDVRSKSEIQIESPEEKAILKNNLKAGDIIKVEDLENPMHFAKLQDSLLIKLDEKVLTRREVVGAKLTEDAPAI
SGVTASMLEGFEEKALEITQDSKEVDFNSVIPLNGNRGFLRLKIEEGTGIYIEIPFAQV

Specific function: D-proline reductase catalyzes the reductive cleavage of a C-N bond in D-proline resulting in the formation of 5- aminovalerate. The alpha subunit has been shown to bind D-proline, presumably via the pyruvoyl group [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015417 [H]

Pfam domain/function: PF09338 Gly_reductase [H]

EC number: =1.21.4.1 [H]

Molecular weight: Translated: 24059; Mature: 23928

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMSAEHAEELKNEPAVVCCRTEEGTILSADNLEDPNIFPDMVDSGLLNIPGDCLKVGEV
CCCCHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHH
IGAKLLKTIDSLTPLAKDIVEGAKSLDRDVRSKSEIQIESPEEKAILKNNLKAGDIIKVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCCCCCEEEEE
DLENPMHFAKLQDSLLIKLDEKVLTRREVVGAKLTEDAPAISGVTASMLEGFEEKALEIT
CCCCHHHHHHHHHHHEEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
QDSKEVDFNSVIPLNGNRGFLRLKIEEGTGIYIEIPFAQV
CCCCCCCCCCEEEECCCCCEEEEEEECCCEEEEEECCCCC
>Mature Secondary Structure 
SMSAEHAEELKNEPAVVCCRTEEGTILSADNLEDPNIFPDMVDSGLLNIPGDCLKVGEV
CCCHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHH
IGAKLLKTIDSLTPLAKDIVEGAKSLDRDVRSKSEIQIESPEEKAILKNNLKAGDIIKVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCCCCCEEEEE
DLENPMHFAKLQDSLLIKLDEKVLTRREVVGAKLTEDAPAISGVTASMLEGFEEKALEIT
CCCCHHHHHHHHHHHEEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
QDSKEVDFNSVIPLNGNRGFLRLKIEEGTGIYIEIPFAQV
CCCCCCCCCCEEEECCCCCEEEEEEECCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10085076 [H]