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The map label for this gene is rnhB [H]

Identifier: 226949794

GI number: 226949794

Start: 2749519

End: 2750328

Strand: Reverse

Name: rnhB [H]

Synonym: CLM_2734

Alternate gene names: 226949794

Gene position: 2750328-2749519 (Counterclockwise)

Preceding gene: 226949795

Following gene: 226949791

Centisome position: 66.19

GC content: 27.16

Gene sequence:

>810_bases
ATGAATTTAAATAATTTAGAAAATATACGATATAATGAAATAAAGGAATTCTCAGATAAAATTAAAAAAGAATTTACATT
TTCTCAAAAAAAACAGGTTATGGACATAATAGAAAAATTAAATAAAGATTCTCGGAAAAATGTTATAAAGTTAGGGCAGG
CTCTTGAAAAATTTTTAAATAAATATGAAGAAGAGTTGAAAAGAACAAATAATATGTATAATTTCGATAAAAGATACGGC
AATAATTATTTAATAGCAGGAGTAGATGAGGTTGGAAGAGGACCTTTAGCAGGACCTATTGTAGCCGCTGCGGTGGTTTT
AGATTTAAATGTGGAGGAAATGCAAAGGATTTTTAATATAAAGGATTCAAAAAAGCTTTCAGAAAAAAAGAGAGAAGAAT
TAGATATAATAATAAGAGAAAAAGCTATAAGCTACAATATAGCCTTAGTAGATAATAAAACAATAGATGAAAGAGGTATA
TCCTGGAGTAATAATGAAGTGCTTAAAAGAGCAGTAGAAGGGCTAAAGGTAAAGCCTGATTTAGTTTTATCTGATGGATA
TGCAGTTAAAAATTTGAATATAAGAAATGAATTTATAATAAAAGGTGATAGTAAAAGTATTAGTATAGCATCTTCATCCA
TTATAGCTAAGGTATATAGAGACAATATGATGAAGGAATATTCCAAAGGGTTAAATATGTATGGTTTCAATCATAATGCA
GGTTATGGTACAGAAGAACATGTACAAGCAATAAAAAAACATGGACCTTCTAAAATACATAGAATGAGTTTTTTAACAAA
TATATTGTAA

Upstream 100 bases:

>100_bases
GGTTATAATATTTCCTACATTATAGTGAATAAGTATTATTTTAGGATAAATATTAAATAAAAATAAATACTAGAAAGTAA
ATTAGTATAGGAGTACAGTT

Downstream 100 bases:

>100_bases
TTAAATAAATAAAAAACGGTTTCTCAAAATAGATTCGATTTTGACAGCCCCAATATAAAAATACACTTATTAGGTGTATT
TTTTATATTTGAAAAGCGTT

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MNLNNLENIRYNEIKEFSDKIKKEFTFSQKKQVMDIIEKLNKDSRKNVIKLGQALEKFLNKYEEELKRTNNMYNFDKRYG
NNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDIIIREKAISYNIALVDNKTIDERGI
SWSNNEVLKRAVEGLKVKPDLVLSDGYAVKNLNIRNEFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNA
GYGTEEHVQAIKKHGPSKIHRMSFLTNIL

Sequences:

>Translated_269_residues
MNLNNLENIRYNEIKEFSDKIKKEFTFSQKKQVMDIIEKLNKDSRKNVIKLGQALEKFLNKYEEELKRTNNMYNFDKRYG
NNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDIIIREKAISYNIALVDNKTIDERGI
SWSNNEVLKRAVEGLKVKPDLVLSDGYAVKNLNIRNEFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNA
GYGTEEHVQAIKKHGPSKIHRMSFLTNIL
>Mature_269_residues
MNLNNLENIRYNEIKEFSDKIKKEFTFSQKKQVMDIIEKLNKDSRKNVIKLGQALEKFLNKYEEELKRTNNMYNFDKRYG
NNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNIKDSKKLSEKKREELDIIIREKAISYNIALVDNKTIDERGI
SWSNNEVLKRAVEGLKVKPDLVLSDGYAVKNLNIRNEFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNA
GYGTEEHVQAIKKHGPSKIHRMSFLTNIL

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=186, Percent_Identity=41.3978494623656, Blast_Score=141, Evalue=5e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 30928; Mature: 30928

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLNNLENIRYNEIKEFSDKIKKEFTFSQKKQVMDIIEKLNKDSRKNVIKLGQALEKFLN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
KYEEELKRTNNMYNFDKRYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNI
HHHHHHHHHCCCCCHHHHHCCCEEEEEHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCC
KDSKKLSEKKREELDIIIREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPD
CCHHHHHHHHHHHHHHHHEEHHEEEEEEEEECCCHHHCCCCCCCHHHHHHHHHCCCCCCC
LVLSDGYAVKNLNIRNEFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNA
EEEECCEEEEECCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCC
GYGTEEHVQAIKKHGPSKIHRMSFLTNIL
CCCCHHHHHHHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLNNLENIRYNEIKEFSDKIKKEFTFSQKKQVMDIIEKLNKDSRKNVIKLGQALEKFLN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
KYEEELKRTNNMYNFDKRYGNNYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMQRIFNI
HHHHHHHHHCCCCCHHHHHCCCEEEEEHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCC
KDSKKLSEKKREELDIIIREKAISYNIALVDNKTIDERGISWSNNEVLKRAVEGLKVKPD
CCHHHHHHHHHHHHHHHHEEHHEEEEEEEEECCCHHHCCCCCCCHHHHHHHHHCCCCCCC
LVLSDGYAVKNLNIRNEFIIKGDSKSISIASSSIIAKVYRDNMMKEYSKGLNMYGFNHNA
EEEECCEEEEECCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCC
GYGTEEHVQAIKKHGPSKIHRMSFLTNIL
CCCCHHHHHHHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA