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The map label for this gene is rbgA [H]

Identifier: 226949795

GI number: 226949795

Start: 2750625

End: 2751503

Strand: Reverse

Name: rbgA [H]

Synonym: CLM_2735

Alternate gene names: 226949795

Gene position: 2751503-2750625 (Counterclockwise)

Preceding gene: 226949796

Following gene: 226949794

Centisome position: 66.22

GC content: 30.03

Gene sequence:

>879_bases
ATGAACATAAATTGGTTTCCAGGTCATATGGCAAAAACTCGTAGACAAATAAAGGAAAGCTTAAAAATGGTAGATGCCAT
AATAGAAATAAGAGATGCTAGAATAGTAAGCTCTAGTAAAAATCCAGATATAGAAGATATATGTGGCAATAAACCACGAA
TAATTCTTTTAAATAAAAAGGATTTAGCAGAGGATAAAGTAACTAAGAAATGGATCAATTCCTTATCACAGGATAACATA
AAAGTTTTAGCAGTAAATTCTGTAACAGGAGAGGGATTAAATAAAATAAAATCTACATTAAATGAATTGTTAAAAGAAAA
ACATGAAAGAATGAAGAATAAAGGCTTAGTTAAAATAGTAGATAGAGTTATGGTGGTAGGTATACCTAATGTAGGAAAAT
CTTCTTTTATAAATAAAATGGCTAAAAACTCTATAGCTAAAGTAGGAGATAGGCCAGGAGTTACAAAGAGCAAACAATGG
ATAAAAACTAAGATAGATATAGAGCTTATGGATACTCCGGGAGTTTTGTGGCCAAAACTAGATAGTGAGATTGTACAATT
AAATTTAGCCTTTACAGGAGCTATTAAAGATGAAATTATGGATATAGAAACTCTAGCTTTAAGGTTAGTAGAAAGGCTTC
AGGTTAAATATCCAGAGAGATTGATGAAAAGATATAAATTAGAAGCATTAGAAGAAAATCCTTTAGATAATTTGGATAAT
ATAGGCAGAAAAAGAGGGGCTTTAATTTCTAAGGGAGAGATAGACTATAATAGAATATCTGTAATTATTTTGGATGAATT
TAGAGGTGGAAAATTAGGTGCCATTTCTTTAGAAGACCCAGAGGATATTACAAAAGATAACATACAAATAGAGGAATAG

Upstream 100 bases:

>100_bases
TTATATAGATACTGTGATTTTATGACAGTCGTTTTCTAAATAGTGGGAGAAATGTTAGGGCTTATAGACATGAGATAAAA
AATAGAGGGAGGATATAAAA

Downstream 100 bases:

>100_bases
GTAAGCTCTCTTAAAGATTAATAATATTATATAATTGAAGGATACATTAGGGCAATGTATCCAATTTTATAAGTATAGAA
ATATTAATATACTAAATCTA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MNINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKDLAEDKVTKKWINSLSQDNI
KVLAVNSVTGEGLNKIKSTLNELLKEKHERMKNKGLVKIVDRVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQW
IKTKIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVKYPERLMKRYKLEALEENPLDNLDN
IGRKRGALISKGEIDYNRISVIILDEFRGGKLGAISLEDPEDITKDNIQIEE

Sequences:

>Translated_292_residues
MNINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKDLAEDKVTKKWINSLSQDNI
KVLAVNSVTGEGLNKIKSTLNELLKEKHERMKNKGLVKIVDRVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQW
IKTKIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVKYPERLMKRYKLEALEENPLDNLDN
IGRKRGALISKGEIDYNRISVIILDEFRGGKLGAISLEDPEDITKDNIQIEE
>Mature_292_residues
MNINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKKDLAEDKVTKKWINSLSQDNI
KVLAVNSVTGEGLNKIKSTLNELLKEKHERMKNKGLVKIVDRVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQW
IKTKIDIELMDTPGVLWPKLDSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVKYPERLMKRYKLEALEENPLDNLDN
IGRKRGALISKGEIDYNRISVIILDEFRGGKLGAISLEDPEDITKDNIQIEE

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=294, Percent_Identity=33.6734693877551, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI7019419, Length=253, Percent_Identity=29.6442687747036, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI296317324, Length=235, Percent_Identity=31.4893617021277, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI9506611, Length=235, Percent_Identity=31.4893617021277, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI45643129, Length=185, Percent_Identity=27.027027027027, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI45643127, Length=185, Percent_Identity=27.027027027027, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI45593130, Length=185, Percent_Identity=27.027027027027, Blast_Score=66, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI193211047, Length=216, Percent_Identity=32.4074074074074, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI32563985, Length=227, Percent_Identity=29.9559471365639, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71990926, Length=223, Percent_Identity=30.0448430493274, Blast_Score=85, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI32563983, Length=223, Percent_Identity=30.0448430493274, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17534827, Length=292, Percent_Identity=27.3972602739726, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI25143545, Length=281, Percent_Identity=27.0462633451957, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115535155, Length=280, Percent_Identity=27.1428571428571, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324381, Length=270, Percent_Identity=27.4074074074074, Blast_Score=86, Evalue=6e-18,
Organism=Saccharomyces cerevisiae, GI6320842, Length=292, Percent_Identity=28.7671232876712, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6323744, Length=225, Percent_Identity=25.7777777777778, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI85815858, Length=303, Percent_Identity=29.7029702970297, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI28572990, Length=282, Percent_Identity=26.9503546099291, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI19922460, Length=277, Percent_Identity=27.7978339350181, Blast_Score=79, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 33104; Mature: 33104

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHCCCCCEEEEECCC
DLAEDKVTKKWINSLSQDNIKVLAVNSVTGEGLNKIKSTLNELLKEKHERMKNKGLVKIV
HHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
DRVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQWIKTKIDIELMDTPGVLWPKL
HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEEEEEECCCCCCCCCC
DSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVKYPERLMKRYKLEALEENPLDNLDN
CCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH
IGRKRGALISKGEIDYNRISVIILDEFRGGKLGAISLEDPEDITKDNIQIEE
HHHHHCCEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCHHHCCCCCEECC
>Mature Secondary Structure
MNINWFPGHMAKTRRQIKESLKMVDAIIEIRDARIVSSSKNPDIEDICGNKPRIILLNKK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHCCCCCEEEEECCC
DLAEDKVTKKWINSLSQDNIKVLAVNSVTGEGLNKIKSTLNELLKEKHERMKNKGLVKIV
HHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
DRVMVVGIPNVGKSSFINKMAKNSIAKVGDRPGVTKSKQWIKTKIDIELMDTPGVLWPKL
HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEEEEEECCCCCCCCCC
DSEIVQLNLAFTGAIKDEIMDIETLALRLVERLQVKYPERLMKRYKLEALEENPLDNLDN
CCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH
IGRKRGALISKGEIDYNRISVIILDEFRGGKLGAISLEDPEDITKDNIQIEE
HHHHHCCEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]