| Definition | Clostridium botulinum A2 str. Kyoto chromosome, complete genome. |
|---|---|
| Accession | NC_012563 |
| Length | 4,155,278 |
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The map label for this gene is cooS [H]
Identifier: 226949486
GI number: 226949486
Start: 2504709
End: 2506673
Strand: Reverse
Name: cooS [H]
Synonym: CLM_2421
Alternate gene names: 226949486
Gene position: 2506673-2504709 (Counterclockwise)
Preceding gene: 226949487
Following gene: 226949485
Centisome position: 60.33
GC content: 34.96
Gene sequence:
>1965_bases ATGAATAAAACCTATAATAAATTTATAGATTTTATAAAGCTAAGCATTATGGGTGAAAGTATATTAGAAAAAGCTGAAGG TCGCGTAAGTTATCATGATTCAGTGGAGGAAATGTTAAAGCGTATAAGAGAAGATGGAATGTCTAATGTATTTGACAGAT GGATAGAGCAAGAAAAAATTCGCTGTAAGTTTTGTCTTCAAGGTTTAAGCTGTCAACTCTGTTCACAAGGACCTTGTAGA ATAAACGAAAAGGGACCACAGAAGAAAGGTGTATGTGGTATTGGACCAGATGCTATGGCTATGAGAAATTTCTTGCTGAA AAATATAATGGGTGCAGGTACATATAGCCATCATGCCTATGAAGCCTTTCGTACATTAAAAGCTACAGCAGAAGGAAAAA CTCCTTTTACTATTAAAGATGTAAACAAATTAAAATGGATGTGTGAAAATCTAGGAATTGATACAAATAAAGATACAAAT CGAATGGCTATAGAATTGGCAGACTTGCTAGAAGAACAACAAAAAATTGATGTAGAGGACAAAAATCTTATGGTAGAAGC TTTTGCACCAAAAAAAAGAAAAGAGCTTTGGAGAAAGTTAAATATTTATCCCGCTGGAACTGTTCATGAAGAACAAAATT GTGTAGCTAGTTGCTTAACTAATGTAGATGGTAATTACAAGTCTTTAGCAGCAAAGGCTTTACGTTTAGGTATAGCTACT ATATATAATTCCCAGATTGGACTTGAAATGGTCCAGGATATTTTATTTGGAACACCTATGCCTCATGAAGTAAATGTAGA TTTAGGTATTATGGATCCGGAATATGTAAATATAGTATTTAATGGCCATCAACCTTGGGGCGGGGTTGCCACAATACAAA AGGCAAAAATGGCTGAAGTTCAACAAAAGGCTAAGGCAGCCGGTGCAAAGGGACTTAGAGTAGTAGGTTCTATTGAAACA GGTCAAGAATTACTTCAAAGATTTGAAGTAGATGATGTTTTTGTAGGTTTAATGGGGAATTGGTTAGCTATAGAACCTCT TTTAGCTACAGGAACAGTAGATGTTATGGCTATGGAAGAAAACTGTTCACCGCCAGCTATAGACCATTATGCAGAAAAAT ATGGGGCAACTTTGGTAAGTATAAGCACTATTATAGATATACCAGGATTGCAACATAAGATTCCTTATAATCCTGAAAAA GTAGATGTTATGGCAGATAGCTTAATAGATTTAGCTATAGAAAATTTTAAAAAGCGTAAAGATAAAGTTAAACCTATGGT ACCAAAGATTACTCAAAAGGCTATTGCTGGTTTTTCTACAGAAGCAGTTTTAGAAGCACTTGGAAATAAACTTGATCCTT TAGTAGATGTAATTGCTGCAGGAAAAATTAAAGGAGTAGTTGCTCTTGCAAACTGTTCGACCCTAAGAAATGGACCACAG GATTGGAACACAGTAAATCTTACAAAAGAACTAATTAACAAAGATATATTAGTAGTTTCTGGAGGCTGTGGAAATCATGC TTTAGAGGTAGCAGGTCTTTGTACATTAGAAGCTGCTAATACCATAGCTGGAGAAGGATTAAAAGAGGTTTGTAATCTTT TAAAGATTCCTCCAGTACTAAGTTTTGGAACTTGCACAGATACAGGAAGAATATCAATGCTTGTAACTGCTCTTGCAGAT CATATGAATTTAGATGTATCTGATCTTCCAATAGCTGTTACTGCTCCAGAATGGATGGAACAAAAGGCAACTATTGACGG AATATTTGCAGTGGCTTATGGTGCATATACTCATTTATCACCAGTGCCATTTATGACTGGAGCACCTGAGCTTGTAAAAT TATTAACAGAAGAAGTAGAGAATATAACTGGAGGAAAGGTTGCTCTTGGAGATGATCCAGTAGAAGTAGCAAATAATATA GAAGCACATATTGTAGGTAAAAGAAATAAATTAGGTTTAAGCTAA
Upstream 100 bases:
>100_bases GAAGTGAAAAAATACCATTGGCTTATGGTATAGCATTATAGAGGTATGCTATTATGTACACTAACTAATTAGTATAATAC TAAATTAAACTAGTAAGTGT
Downstream 100 bases:
>100_bases ATAAATTCAGACTAATTCACGAAATAACTACAAAATAAAATTTGTAGTTATTTCTTTATTTGCATTAAAAAATTATATTT GTATAAAAAACTATTCTTTG
Product: carbon monoxide dehydrogenase
Products: NA
Alternate protein names: CODH [H]
Number of amino acids: Translated: 654; Mature: 654
Protein sequence:
>654_residues MNKTYNKFIDFIKLSIMGESILEKAEGRVSYHDSVEEMLKRIREDGMSNVFDRWIEQEKIRCKFCLQGLSCQLCSQGPCR INEKGPQKKGVCGIGPDAMAMRNFLLKNIMGAGTYSHHAYEAFRTLKATAEGKTPFTIKDVNKLKWMCENLGIDTNKDTN RMAIELADLLEEQQKIDVEDKNLMVEAFAPKKRKELWRKLNIYPAGTVHEEQNCVASCLTNVDGNYKSLAAKALRLGIAT IYNSQIGLEMVQDILFGTPMPHEVNVDLGIMDPEYVNIVFNGHQPWGGVATIQKAKMAEVQQKAKAAGAKGLRVVGSIET GQELLQRFEVDDVFVGLMGNWLAIEPLLATGTVDVMAMEENCSPPAIDHYAEKYGATLVSISTIIDIPGLQHKIPYNPEK VDVMADSLIDLAIENFKKRKDKVKPMVPKITQKAIAGFSTEAVLEALGNKLDPLVDVIAAGKIKGVVALANCSTLRNGPQ DWNTVNLTKELINKDILVVSGGCGNHALEVAGLCTLEAANTIAGEGLKEVCNLLKIPPVLSFGTCTDTGRISMLVTALAD HMNLDVSDLPIAVTAPEWMEQKATIDGIFAVAYGAYTHLSPVPFMTGAPELVKLLTEEVENITGGKVALGDDPVEVANNI EAHIVGKRNKLGLS
Sequences:
>Translated_654_residues MNKTYNKFIDFIKLSIMGESILEKAEGRVSYHDSVEEMLKRIREDGMSNVFDRWIEQEKIRCKFCLQGLSCQLCSQGPCR INEKGPQKKGVCGIGPDAMAMRNFLLKNIMGAGTYSHHAYEAFRTLKATAEGKTPFTIKDVNKLKWMCENLGIDTNKDTN RMAIELADLLEEQQKIDVEDKNLMVEAFAPKKRKELWRKLNIYPAGTVHEEQNCVASCLTNVDGNYKSLAAKALRLGIAT IYNSQIGLEMVQDILFGTPMPHEVNVDLGIMDPEYVNIVFNGHQPWGGVATIQKAKMAEVQQKAKAAGAKGLRVVGSIET GQELLQRFEVDDVFVGLMGNWLAIEPLLATGTVDVMAMEENCSPPAIDHYAEKYGATLVSISTIIDIPGLQHKIPYNPEK VDVMADSLIDLAIENFKKRKDKVKPMVPKITQKAIAGFSTEAVLEALGNKLDPLVDVIAAGKIKGVVALANCSTLRNGPQ DWNTVNLTKELINKDILVVSGGCGNHALEVAGLCTLEAANTIAGEGLKEVCNLLKIPPVLSFGTCTDTGRISMLVTALAD HMNLDVSDLPIAVTAPEWMEQKATIDGIFAVAYGAYTHLSPVPFMTGAPELVKLLTEEVENITGGKVALGDDPVEVANNI EAHIVGKRNKLGLS >Mature_654_residues MNKTYNKFIDFIKLSIMGESILEKAEGRVSYHDSVEEMLKRIREDGMSNVFDRWIEQEKIRCKFCLQGLSCQLCSQGPCR INEKGPQKKGVCGIGPDAMAMRNFLLKNIMGAGTYSHHAYEAFRTLKATAEGKTPFTIKDVNKLKWMCENLGIDTNKDTN RMAIELADLLEEQQKIDVEDKNLMVEAFAPKKRKELWRKLNIYPAGTVHEEQNCVASCLTNVDGNYKSLAAKALRLGIAT IYNSQIGLEMVQDILFGTPMPHEVNVDLGIMDPEYVNIVFNGHQPWGGVATIQKAKMAEVQQKAKAAGAKGLRVVGSIET GQELLQRFEVDDVFVGLMGNWLAIEPLLATGTVDVMAMEENCSPPAIDHYAEKYGATLVSISTIIDIPGLQHKIPYNPEK VDVMADSLIDLAIENFKKRKDKVKPMVPKITQKAIAGFSTEAVLEALGNKLDPLVDVIAAGKIKGVVALANCSTLRNGPQ DWNTVNLTKELINKDILVVSGGCGNHALEVAGLCTLEAANTIAGEGLKEVCNLLKIPPVLSFGTCTDTGRISMLVTALAD HMNLDVSDLPIAVTAPEWMEQKATIDGIFAVAYGAYTHLSPVPFMTGAPELVKLLTEEVENITGGKVALGDDPVEVANNI EAHIVGKRNKLGLS
Specific function: Unknown
COG id: COG1151
COG function: function code C; 6Fe-6S prismane cluster-containing protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Ni-containing carbon monoxide dehydrogenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016101 - InterPro: IPR010047 - InterPro: IPR004137 - InterPro: IPR011254 - InterPro: IPR016099 [H]
Pfam domain/function: PF03063 Prismane [H]
EC number: =1.2.99.2 [H]
Molecular weight: Translated: 71470; Mature: 71470
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: PS50168 DED ; PS00267 TACHYKININ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKTYNKFIDFIKLSIMGESILEKAEGRVSYHDSVEEMLKRIREDGMSNVFDRWIEQEKI CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH RCKFCLQGLSCQLCSQGPCRINEKGPQKKGVCGIGPDAMAMRNFLLKNIMGAGTYSHHAY HHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH EAFRTLKATAEGKTPFTIKDVNKLKWMCENLGIDTNKDTNRMAIELADLLEEQQKIDVED HHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC KNLMVEAFAPKKRKELWRKLNIYPAGTVHEEQNCVASCLTNVDGNYKSLAAKALRLGIAT CCEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH IYNSQIGLEMVQDILFGTPMPHEVNVDLGIMDPEYVNIVFNGHQPWGGVATIQKAKMAEV HHCCCCCHHHHHHHHHCCCCCCEECEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHH QQKAKAAGAKGLRVVGSIETGQELLQRFEVDDVFVGLMGNWLAIEPLLATGTVDVMAMEE HHHHHHCCCCCEEEEECCHHHHHHHHHHCHHHHHHHHHCCCEEECCCHHCCCEEEEEECC NCSPPAIDHYAEKYGATLVSISTIIDIPGLQHKIPYNPEKVDVMADSLIDLAIENFKKRK CCCCCHHHHHHHHHCCHHEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH DKVKPMVPKITQKAIAGFSTEAVLEALGNKLDPLVDVIAAGKIKGVVALANCSTLRNGPQ HHCCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCHHHCCCCC DWNTVNLTKELINKDILVVSGGCGNHALEVAGLCTLEAANTIAGEGLKEVCNLLKIPPVL CCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHEEEHHHHHHHHHCCHHHHHHHHCCCCCC SFGTCTDTGRISMLVTALADHMNLDVSDLPIAVTAPEWMEQKATIDGIFAVAYGAYTHLS CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCC PVPFMTGAPELVKLLTEEVENITGGKVALGDDPVEVANNIEAHIVGKRNKLGLS CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCEEEEEECCCCCCCC >Mature Secondary Structure MNKTYNKFIDFIKLSIMGESILEKAEGRVSYHDSVEEMLKRIREDGMSNVFDRWIEQEKI CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH RCKFCLQGLSCQLCSQGPCRINEKGPQKKGVCGIGPDAMAMRNFLLKNIMGAGTYSHHAY HHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH EAFRTLKATAEGKTPFTIKDVNKLKWMCENLGIDTNKDTNRMAIELADLLEEQQKIDVED HHHHHHHHHCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC KNLMVEAFAPKKRKELWRKLNIYPAGTVHEEQNCVASCLTNVDGNYKSLAAKALRLGIAT CCEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH IYNSQIGLEMVQDILFGTPMPHEVNVDLGIMDPEYVNIVFNGHQPWGGVATIQKAKMAEV HHCCCCCHHHHHHHHHCCCCCCEECEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHH QQKAKAAGAKGLRVVGSIETGQELLQRFEVDDVFVGLMGNWLAIEPLLATGTVDVMAMEE HHHHHHCCCCCEEEEECCHHHHHHHHHHCHHHHHHHHHCCCEEECCCHHCCCEEEEEECC NCSPPAIDHYAEKYGATLVSISTIIDIPGLQHKIPYNPEKVDVMADSLIDLAIENFKKRK CCCCCHHHHHHHHHCCHHEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH DKVKPMVPKITQKAIAGFSTEAVLEALGNKLDPLVDVIAAGKIKGVVALANCSTLRNGPQ HHCCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCHHHCCCCC DWNTVNLTKELINKDILVVSGGCGNHALEVAGLCTLEAANTIAGEGLKEVCNLLKIPPVL CCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHEEEHHHHHHHHHCCHHHHHHHHCCCCCC SFGTCTDTGRISMLVTALADHMNLDVSDLPIAVTAPEWMEQKATIDGIFAVAYGAYTHLS CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCC PVPFMTGAPELVKLLTEEVENITGGKVALGDDPVEVANNIEAHIVGKRNKLGLS CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]