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The map label for this gene is 226949281

Identifier: 226949281

GI number: 226949281

Start: 2262799

End: 2263554

Strand: Direct

Name: 226949281

Synonym: CLM_2200

Alternate gene names: NA

Gene position: 2262799-2263554 (Clockwise)

Preceding gene: 226949280

Following gene: 226949284

Centisome position: 54.46

GC content: 23.81

Gene sequence:

>756_bases
ATGGACTGTATAAATTTTAATGAATTTAAATTGGCAAAAAAAAGCGTGAAGAAAAATAAATATGAAAGTAATGCAGAAAA
ATTTTTTTCTAATGCTTACTATTCTTACGATATAAAAGACAAAATTAAATTTTACACCATTTCAATAAAACTAAAACCTT
CTTTTATAGATGCTTATTTTAACAGAGCTGAATTATATAAAGAATTAGGAGAATATAATAAATCTATAGCGGATTATAAT
AAAATTTTAGAATTAAATCCTAAAGATAAAGATTGTTACAATAATAGAGCTATTGTGTATTATCTAATAAAAAATTATGA
TAAATCACTGCAGGACTTAGATGTATTAGTTTCCATGGATAAACATTATAAAAACATATATTTTAATAGAGGTATGGTTT
TCCTAGGAATAGAAGATTATAAAAGAGCAGCCATTGAATTTACAAAGGCTATACATGAAGACTTGGCAGATAGTGAAGCA
TACGAAAATAGAGCCTTTACTTACTATAATTTAAAAAAATATTCTTCTTCTATAAAAGACTATACCAATGCTCTTAAATT
AACACCTGAAAATAAAAATATTTACTTAAGTAGAGGAACCATATACTATAAAATAAAAAACTATGAAGATGCTATATCTG
ACTATATGAAAGCTTTAAATTGCAAAGAAAAAGACCCTTCTTTTTATCATAAAATTTACACTAATTGCAATGATAAGCTT
AATAAAAAAATTCTACCCTTTGTTAATTTCAAATAG

Upstream 100 bases:

>100_bases
ACTATAGTTATTTTATATATTAAAACATTCTATTATTCTTATATAAAAATATGCATAGAATAAAGTTGAGTATACAATTT
TTTGGAGGATTTATTTAATT

Downstream 100 bases:

>100_bases
CATAGTACATGGAAAAGATTTTAATAAAACTATGCCCTAATAACAATATAACTGTCATAATAAGCCTTTATTAATATTTT
AGCAAATTCTTATGGAGCAC

Product: tetratricopeptide repeat family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MDCINFNEFKLAKKSVKKNKYESNAEKFFSNAYYSYDIKDKIKFYTISIKLKPSFIDAYFNRAELYKELGEYNKSIADYN
KILELNPKDKDCYNNRAIVYYLIKNYDKSLQDLDVLVSMDKHYKNIYFNRGMVFLGIEDYKRAAIEFTKAIHEDLADSEA
YENRAFTYYNLKKYSSSIKDYTNALKLTPENKNIYLSRGTIYYKIKNYEDAISDYMKALNCKEKDPSFYHKIYTNCNDKL
NKKILPFVNFK

Sequences:

>Translated_251_residues
MDCINFNEFKLAKKSVKKNKYESNAEKFFSNAYYSYDIKDKIKFYTISIKLKPSFIDAYFNRAELYKELGEYNKSIADYN
KILELNPKDKDCYNNRAIVYYLIKNYDKSLQDLDVLVSMDKHYKNIYFNRGMVFLGIEDYKRAAIEFTKAIHEDLADSEA
YENRAFTYYNLKKYSSSIKDYTNALKLTPENKNIYLSRGTIYYKIKNYEDAISDYMKALNCKEKDPSFYHKIYTNCNDKL
NKKILPFVNFK
>Mature_251_residues
MDCINFNEFKLAKKSVKKNKYESNAEKFFSNAYYSYDIKDKIKFYTISIKLKPSFIDAYFNRAELYKELGEYNKSIADYN
KILELNPKDKDCYNNRAIVYYLIKNYDKSLQDLDVLVSMDKHYKNIYFNRGMVFLGIEDYKRAAIEFTKAIHEDLADSEA
YENRAFTYYNLKKYSSSIKDYTNALKLTPENKNIYLSRGTIYYKIKNYEDAISDYMKALNCKEKDPSFYHKIYTNCNDKL
NKKILPFVNFK

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI310123097, Length=202, Percent_Identity=26.2376237623762, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI310131789, Length=202, Percent_Identity=26.2376237623762, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI310110582, Length=202, Percent_Identity=26.2376237623762, Blast_Score=72, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 29981; Mature: 29981

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDCINFNEFKLAKKSVKKNKYESNAEKFFSNAYYSYDIKDKIKFYTISIKLKPSFIDAYF
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCEEEEECCCCEEEEEEEEEECHHHHHHHH
NRAELYKELGEYNKSIADYNKILELNPKDKDCYNNRAIVYYLIKNYDKSLQDLDVLVSMD
HHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHCCCEEEEEEECCCCCHHHHHHHHHHHH
KHYKNIYFNRGMVFLGIEDYKRAAIEFTKAIHEDLADSEAYENRAFTYYNLKKYSSSIKD
HHHHHEEEECCEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEHHHHHHHHHH
YTNALKLTPENKNIYLSRGTIYYKIKNYEDAISDYMKALNCKEKDPSFYHKIYTNCNDKL
HHHHEEECCCCCEEEEECCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHH
NKKILPFVNFK
CCCCCCCCCCC
>Mature Secondary Structure
MDCINFNEFKLAKKSVKKNKYESNAEKFFSNAYYSYDIKDKIKFYTISIKLKPSFIDAYF
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCEEEEECCCCEEEEEEEEEECHHHHHHHH
NRAELYKELGEYNKSIADYNKILELNPKDKDCYNNRAIVYYLIKNYDKSLQDLDVLVSMD
HHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHCCCEEEEEEECCCCCHHHHHHHHHHHH
KHYKNIYFNRGMVFLGIEDYKRAAIEFTKAIHEDLADSEAYENRAFTYYNLKKYSSSIKD
HHHHHEEEECCEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEHHHHHHHHHH
YTNALKLTPENKNIYLSRGTIYYKIKNYEDAISDYMKALNCKEKDPSFYHKIYTNCNDKL
HHHHEEECCCCCEEEEECCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHH
NKKILPFVNFK
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1368342; 8905231 [H]