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The map label for this gene is 226949088

Identifier: 226949088

GI number: 226949088

Start: 2070988

End: 2071611

Strand: Direct

Name: 226949088

Synonym: CLM_2004

Alternate gene names: NA

Gene position: 2070988-2071611 (Clockwise)

Preceding gene: 226949087

Following gene: 226949096

Centisome position: 49.84

GC content: 36.54

Gene sequence:

>624_bases
TTGCTGTTCAACATATTATATACTGCTTTCGTTTTGCCCGGTATCATATTTCTCGTGATCTTTTCTGTTAGTTGTAGCGG
TGGTATCATCAATTTCATTATGAAATCTAGCGGTAGTTTTTATAGAAATCTGATTGCACCTGTGAGACGAAGCTCAATTG
TGCTTGGCCAAATGTTAGAAGTGATACTGGTTTCCTTTATGGAAGTAGGTATTTTATTTGTTGTAAGTCTTTTTTTCTCA
GTAAAGATATCATCCAGCATCACCGGGATTGCTTTTATGATACTACTGATTTTTATGGCATCCTTCTTTCTGTCAGGACT
TGCCTATTTCATCAGCCTGTCTTTGCCAAATGAAGTAATATATGAGACAATTATGACTGCTATTATCCTGCCTATATTCT
TTTTGAGCACAGCTCTTTTTCCTTTAGAAAATTTGTCTGGAGGTTTGGCTATAGCTGTGAAACTCAATTCATTTACGTAC
ATTATTAGTGCTCTGCGCAGTTTAATATTCGGAGAAATCATTGTGTTTTGGGACATTCTGCCTGTCATACTGCTATTTGC
AGTGTTGTGCTGTATTAGATTTGCACTGGCAATATGGAGACTCAAAAAAGAAACTGCCCAGTAA

Upstream 100 bases:

>100_bases
GTGATGATATGGAGTGGTTGAAGCAACTAAGCCAAGCAATTGATTACATAGAAAATAATCTAGAAGGTGATATATCTTAT
GATGAAGCTGCAAAAATTGC

Downstream 100 bases:

>100_bases
TTGAGATTATAACATTTTTGTAAATACAGAATATAAATCTATAAAAAAGAGAAGATATAAATTTCAAAGATATAAAATTA
GCTGCCCTTGTAACTAATAA

Product: ABC transporter permease

Products: NA

Alternate protein names: ABC Transporter Permease Protein; ABC Transporter; ABC Transporter Permease; Multidrug ABC Transporter Permease Protein; ABC Efflux Pump Inner Membrane Subunit

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MLFNILYTAFVLPGIIFLVIFSVSCSGGIINFIMKSSGSFYRNLIAPVRRSSIVLGQMLEVILVSFMEVGILFVVSLFFS
VKISSSITGIAFMILLIFMASFFLSGLAYFISLSLPNEVIYETIMTAIILPIFFLSTALFPLENLSGGLAIAVKLNSFTY
IISALRSLIFGEIIVFWDILPVILLFAVLCCIRFALAIWRLKKETAQ

Sequences:

>Translated_207_residues
MLFNILYTAFVLPGIIFLVIFSVSCSGGIINFIMKSSGSFYRNLIAPVRRSSIVLGQMLEVILVSFMEVGILFVVSLFFS
VKISSSITGIAFMILLIFMASFFLSGLAYFISLSLPNEVIYETIMTAIILPIFFLSTALFPLENLSGGLAIAVKLNSFTY
IISALRSLIFGEIIVFWDILPVILLFAVLCCIRFALAIWRLKKETAQ
>Mature_207_residues
MLFNILYTAFVLPGIIFLVIFSVSCSGGIINFIMKSSGSFYRNLIAPVRRSSIVLGQMLEVILVSFMEVGILFVVSLFFS
VKISSSITGIAFMILLIFMASFFLSGLAYFISLSLPNEVIYETIMTAIILPIFFLSTALFPLENLSGGLAIAVKLNSFTY
IISALRSLIFGEIIVFWDILPVILLFAVLCCIRFALAIWRLKKETAQ

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22988; Mature: 22988

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFNILYTAFVLPGIIFLVIFSVSCSGGIINFIMKSSGSFYRNLIAPVRRSSIVLGQMLE
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
VILVSFMEVGILFVVSLFFSVKISSSITGIAFMILLIFMASFFLSGLAYFISLSLPNEVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
YETIMTAIILPIFFLSTALFPLENLSGGLAIAVKLNSFTYIISALRSLIFGEIIVFWDIL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
PVILLFAVLCCIRFALAIWRLKKETAQ
HHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLFNILYTAFVLPGIIFLVIFSVSCSGGIINFIMKSSGSFYRNLIAPVRRSSIVLGQMLE
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
VILVSFMEVGILFVVSLFFSVKISSSITGIAFMILLIFMASFFLSGLAYFISLSLPNEVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
YETIMTAIILPIFFLSTALFPLENLSGGLAIAVKLNSFTYIISALRSLIFGEIIVFWDIL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
PVILLFAVLCCIRFALAIWRLKKETAQ
HHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA