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The map label for this gene is yqfA [C]

Identifier: 226948920

GI number: 226948920

Start: 1861354

End: 1862004

Strand: Reverse

Name: yqfA [C]

Synonym: CLM_1830

Alternate gene names: 226948920

Gene position: 1862004-1861354 (Counterclockwise)

Preceding gene: 226948924

Following gene: 226948909

Centisome position: 44.81

GC content: 29.19

Gene sequence:

>651_bases
ATGTTTAAAAAATTTAGAGATCCAGTAAGTGGTTTAACTCATTTGTTTGGAGCTATTATGTCTATAGTAGGGCTTATAGT
GTTGGTTAATTACTCAATATTTCAACATAGCCCTTTGCACATTACAGTTTTTGTAATTTTTGGAGCAAGTTTAATATTAT
TATATAGTGCTAGCTCTATATATCATCTGGTAACAACTTCTAAAAAATCTATTAGAATATTAAGGAGAATAGACCATTCA
ATGATTTATGTTTTGATTGCAGGTAGTTACACTCCTATTTGTTTATTGGCTTTAAAAGGAACCTTTGGATTAGCTATATT
AACTATTATTTGGACTTTAGCTATTATTGGCATACTAGTTAAAAATTTTTGGTTTTCTGCTCCACGATGGATATCTACTG
GTTTTTATCTAATTATGGGGTGGCTTATAGTTGTTGCAATATTTCCATTATCTAAGACTCTTTCCATTGGAGGTTTATTT
TGGTTAATAGCTGGTGGAGTTGCTTATTCTATAGGTGCAGTAATTTATGGCACAAAACGACCTAAAATTGCTAGTAAATA
TTTTACTTTCCATGATATTTTTCATATATTTGTACTTCTAGGTAGCTTATGTCATTTTATACTTATGTTAAATTACATAA
TGTATATGTAG

Upstream 100 bases:

>100_bases
TGAAAAATTTTATATTTAGTATTAGAATGATAATAACACAACACATAGTTTTAAAAACTACATATCATTATATTAATGCA
TTTTAGAGAGGATGATTTTT

Downstream 100 bases:

>100_bases
AAAAAGGATAACCACTAAGGCTATCCTTTTATTATTTATATTTTCTCTTTGTAACAAAAAATCATCCCCTTAAGTAAATT
TTAACCATTTTATTAATGGG

Product: putative hemolysin III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MFKKFRDPVSGLTHLFGAIMSIVGLIVLVNYSIFQHSPLHITVFVIFGASLILLYSASSIYHLVTTSKKSIRILRRIDHS
MIYVLIAGSYTPICLLALKGTFGLAILTIIWTLAIIGILVKNFWFSAPRWISTGFYLIMGWLIVVAIFPLSKTLSIGGLF
WLIAGGVAYSIGAVIYGTKRPKIASKYFTFHDIFHIFVLLGSLCHFILMLNYIMYM

Sequences:

>Translated_216_residues
MFKKFRDPVSGLTHLFGAIMSIVGLIVLVNYSIFQHSPLHITVFVIFGASLILLYSASSIYHLVTTSKKSIRILRRIDHS
MIYVLIAGSYTPICLLALKGTFGLAILTIIWTLAIIGILVKNFWFSAPRWISTGFYLIMGWLIVVAIFPLSKTLSIGGLF
WLIAGGVAYSIGAVIYGTKRPKIASKYFTFHDIFHIFVLLGSLCHFILMLNYIMYM
>Mature_216_residues
MFKKFRDPVSGLTHLFGAIMSIVGLIVLVNYSIFQHSPLHITVFVIFGASLILLYSASSIYHLVTTSKKSIRILRRIDHS
MIYVLIAGSYTPICLLALKGTFGLAILTIIWTLAIIGILVKNFWFSAPRWISTGFYLIMGWLIVVAIFPLSKTLSIGGLF
WLIAGGVAYSIGAVIYGTKRPKIASKYFTFHDIFHIFVLLGSLCHFILMLNYIMYM

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Escherichia coli, GI1789266, Length=209, Percent_Identity=35.8851674641148, Blast_Score=116, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI71996356, Length=193, Percent_Identity=31.0880829015544, Blast_Score=74, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 24251; Mature: 24251

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKKFRDPVSGLTHLFGAIMSIVGLIVLVNYSIFQHSPLHITVFVIFGASLILLYSASSI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHH
YHLVTTSKKSIRILRRIDHSMIYVLIAGSYTPICLLALKGTFGLAILTIIWTLAIIGILV
HHHHHCCHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNFWFSAPRWISTGFYLIMGWLIVVAIFPLSKTLSIGGLFWLIAGGVAYSIGAVIYGTKR
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
PKIASKYFTFHDIFHIFVLLGSLCHFILMLNYIMYM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MFKKFRDPVSGLTHLFGAIMSIVGLIVLVNYSIFQHSPLHITVFVIFGASLILLYSASSI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHH
YHLVTTSKKSIRILRRIDHSMIYVLIAGSYTPICLLALKGTFGLAILTIIWTLAIIGILV
HHHHHCCHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNFWFSAPRWISTGFYLIMGWLIVVAIFPLSKTLSIGGLFWLIAGGVAYSIGAVIYGTKR
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
PKIASKYFTFHDIFHIFVLLGSLCHFILMLNYIMYM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]