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The map label for this gene is cbbR [H]

Identifier: 226948909

GI number: 226948909

Start: 1847661

End: 1848551

Strand: Reverse

Name: cbbR [H]

Synonym: CLM_1819

Alternate gene names: 226948909

Gene position: 1848551-1847661 (Counterclockwise)

Preceding gene: 226948920

Following gene: 226948882

Centisome position: 44.49

GC content: 27.83

Gene sequence:

>891_bases
ATGAATTTTGAATATCTCCAATCTTTTTATATAACTGTAAAATGTAATAGCATATCAAAGGCAGCTGAAGCTCTGCACCT
TACCCAACCAGGGCTTAGTATGCAACTTAAAAATCTTGAAAAAGAAATTGGAGCAGATCTATTGATAAGAAGTAATAAGG
GAGTGAGACCTACAGAGGAAGGTAAAATTATATACAATTATGCGGACACTATTCTATCTATGAAAGACAATATAGAAAGA
GATATTAAAAATATAAAAAAAACTAGACCTAAATTAATCATAAGTTCTTGTAAAAGTGTGGGCGAATATGCACTACCTTG
CAGCATATACATTTTTAAAAAGTTTAATAAAGAAGTGGACATAGATATGGAAATATTAAATTCTACCGAGGTTATGGAAA
AATTATGTGATCACTCTAGTAATATCGGAATTATTCAAGATCTGCCTAAGGATAAAAGTATAGATGCAAAACTTATAACC
TCAGATGAATTAATTTTGGTGGGGAATAATAAATATAACAAAGATAACATCACTTTAGAAGAACTAAAAAATTTACCATT
AATTTTACGAGAAAAAACATCTAGTGCCACATATTTAGTAAAAAAAGCTCTTTCTGAAAAAGGAGTTAGTATAGAGGACT
TAAACATTGTATATAATCTTAACTCTCCAGAAGCTATTAAGTCTTCCATATGTGCCGGAAAAGGATTTGCTTTCTTACCT
AAACTAACGGTGAAAAAGGAGTTAAAAAAAGAAAGTATTAAGCATATAAATTTAGAAAATATAGATATTAAATTTAATTA
TTATGTAATATTTCGAAAAAATTATGTATTTACCAAATATGAAAAAATGTTTGTTGATTTTATAATATCTAGAAAAAGGG
GATTCTGCTAA

Upstream 100 bases:

>100_bases
ATCATTACACCCTATTTTATAATAAGTAAGTGTTATACTGCATAACAGTTGCTTATATAGCAGTTATCTAAAATTATTAA
TTCTAAGGATGTGAACATAT

Downstream 100 bases:

>100_bases
TAAAAATTAAAGAAGTTTATATTATCTATTTTATAATATAAACTTCTTTAATATTAGCGTACCTACAAAGGCTCCTAAAG
TAATAAAAATCCAATATATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: RuBisCO operon transcriptional regulator [H]

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNFEYLQSFYITVKCNSISKAAEALHLTQPGLSMQLKNLEKEIGADLLIRSNKGVRPTEEGKIIYNYADTILSMKDNIER
DIKNIKKTRPKLIISSCKSVGEYALPCSIYIFKKFNKEVDIDMEILNSTEVMEKLCDHSSNIGIIQDLPKDKSIDAKLIT
SDELILVGNNKYNKDNITLEELKNLPLILREKTSSATYLVKKALSEKGVSIEDLNIVYNLNSPEAIKSSICAGKGFAFLP
KLTVKKELKKESIKHINLENIDIKFNYYVIFRKNYVFTKYEKMFVDFIISRKRGFC

Sequences:

>Translated_296_residues
MNFEYLQSFYITVKCNSISKAAEALHLTQPGLSMQLKNLEKEIGADLLIRSNKGVRPTEEGKIIYNYADTILSMKDNIER
DIKNIKKTRPKLIISSCKSVGEYALPCSIYIFKKFNKEVDIDMEILNSTEVMEKLCDHSSNIGIIQDLPKDKSIDAKLIT
SDELILVGNNKYNKDNITLEELKNLPLILREKTSSATYLVKKALSEKGVSIEDLNIVYNLNSPEAIKSSICAGKGFAFLP
KLTVKKELKKESIKHINLENIDIKFNYYVIFRKNYVFTKYEKMFVDFIISRKRGFC
>Mature_296_residues
MNFEYLQSFYITVKCNSISKAAEALHLTQPGLSMQLKNLEKEIGADLLIRSNKGVRPTEEGKIIYNYADTILSMKDNIER
DIKNIKKTRPKLIISSCKSVGEYALPCSIYIFKKFNKEVDIDMEILNSTEVMEKLCDHSSNIGIIQDLPKDKSIDAKLIT
SDELILVGNNKYNKDNITLEELKNLPLILREKTSSATYLVKKALSEKGVSIEDLNIVYNLNSPEAIKSSICAGKGFAFLP
KLTVKKELKKESIKHINLENIDIKFNYYVIFRKNYVFTKYEKMFVDFIISRKRGFC

Specific function: Transcriptional activator for the cbb operon for RuBisCO and other Calvin cycle genes [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=27.4193548387097, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=22.8373702422145, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787879, Length=195, Percent_Identity=25.1282051282051, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790399, Length=296, Percent_Identity=21.6216216216216, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=21.7993079584775, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI157672245, Length=285, Percent_Identity=21.4035087719298, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788748, Length=250, Percent_Identity=22, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI87082132, Length=245, Percent_Identity=20.8163265306122, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33895; Mature: 33895

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFEYLQSFYITVKCNSISKAAEALHLTQPGLSMQLKNLEKEIGADLLIRSNKGVRPTEE
CCHHEEEEEEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC
GKIIYNYADTILSMKDNIERDIKNIKKTRPKLIISSCKSVGEYALPCSIYIFKKFNKEVD
CEEEEEEHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCC
IDMEILNSTEVMEKLCDHSSNIGIIQDLPKDKSIDAKLITSDELILVGNNKYNKDNITLE
CCCEECCHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEECCCEEEECCCCCCCCCCCHH
ELKNLPLILREKTSSATYLVKKALSEKGVSIEDLNIVYNLNSPEAIKSSICAGKGFAFLP
HHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHCCCCCEECC
KLTVKKELKKESIKHINLENIDIKFNYYVIFRKNYVFTKYEKMFVDFIISRKRGFC
CHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNFEYLQSFYITVKCNSISKAAEALHLTQPGLSMQLKNLEKEIGADLLIRSNKGVRPTEE
CCHHEEEEEEEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC
GKIIYNYADTILSMKDNIERDIKNIKKTRPKLIISSCKSVGEYALPCSIYIFKKFNKEVD
CEEEEEEHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCC
IDMEILNSTEVMEKLCDHSSNIGIIQDLPKDKSIDAKLITSDELILVGNNKYNKDNITLE
CCCEECCHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEECCCEEEECCCCCCCCCCCHH
ELKNLPLILREKTSSATYLVKKALSEKGVSIEDLNIVYNLNSPEAIKSSICAGKGFAFLP
HHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHCCCCCEECC
KLTVKKELKKESIKHINLENIDIKFNYYVIFRKNYVFTKYEKMFVDFIISRKRGFC
CHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCEEEHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431 [H]