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The map label for this gene is tsr [C]

Identifier: 226948634

GI number: 226948634

Start: 1587997

End: 1589715

Strand: Direct

Name: tsr [C]

Synonym: CLM_1529

Alternate gene names: 226948634

Gene position: 1587997-1589715 (Clockwise)

Preceding gene: 226948632

Following gene: 226948635

Centisome position: 38.22

GC content: 27.87

Gene sequence:

>1719_bases
ATGGAAAATTTAAAAGTAAAAAACAAAATACTTTTTATGAGTTCAATTATGCTGATTTTTACAATAATTGTAGGGATAAC
AGGATATTATTTTAATGCTAAATCTAATAAAGCCATTAAAAAATTATATGAAGATAATCTTATTAGTGTAAAAGTATTAA
ATGATGCAAGAGCTCAGGCAAGAGGGGCAGAAGCAGATGTTGCTAGAATAGTCATCTTATCTAAAGATGTAAAAACTCAG
GAAAAATTAAAAAAAGATATTGAAAGTAGGGTAGAAAAATTTAATAAAGATATTGAAGAATTTAAAAGTATAGGTCTCAA
TAGTGAAAAGGAAAAAGAACTTTTAGATTATATGGAAAAAAATTTAAATGAGTTTAGACAAAGAAGAGAAGAAGTATTCA
AAGTAGCTAAGGAAGGAAAGATGGATTTAGCCGCTAAAAAGTTTAGTGAATTAAATGAGGTAAATGAAAATTATCAGAAG
GCTCTTATAGAATTATCAGATTTTAATGTTAAAGAGGCAGAAGAGTTTAAGATTCAAAATGATAGAGCTAATGCTTTTTC
AAATAGATTTATAACAATAATTTTAAGTTTAAGTATAGTTATAGCGCTAGTTACTACTAATATAATTTCTAAATCTATAA
TTAATCCATTAAAGGAATCAGTAGAATACTTAGATAAATTGTCTACAGGAAATTTTACAGAAAAAGTTTCAGATAAGCTT
TTAAAGAGAAAAGATGAAGTTGGACAATTAGCTAATGCAGTTAGCAAAATGTATGGATCTATAAGAAATATAATAAATGA
TGTTTTAAATGAGATGAGTAATTCAAGTAATGTAGTTGAAAATATAGATGAGAATATTAATGATTTAAATAAGAGAATAC
AAGAAGCATCAACGGCTACAGAAGAATTATCTGCTAGTATGGAGGAGACAGGAGCTTCAGCAGAGGAAATGAGTGCAACT
TCAGAGGAAATAGAAAAGGCTGTAGAAGATATAGCTTTAAAGGCAGAAGAAGGTGCAAGTAGTGCAGGTAAAATATTAAC
TAAAGTGGAAGAACTAAAATCTGATGCTATAAAATCTCAAAAAAATGCAAATAAAGTTAAAGCAAATATAGATAGTGCAA
CCAAAGATGCTATAGAAAAATCTAAAACTATAGAAGAAATAAATGTATTATCTGAAGCTATACTTGAAATAACCTCTCAA
ACAAATTTATTAGCTTTAAATGCGGCTATCGAAGCTGCAAGAGCAGGAGAATCTGGTAAAGGGTTTGCAGTAGTGGCTGA
AGAAATAAGGAAATTAGCGGAGCAATCAAGTCAAACTGTAGTGAGAATACAAGATACAACAAAGGAAGTATTGAAAGCTG
TAGAGGATCTTAAAAAGAATTCAAGTAATGCATTAAATTTTATAGATAGTTATATAGTAAAAGCTCACCAAGATACAGTA
GAAGTTTTTGATTCTTATAGTAAGGATGCTACTTATTATAATGATATATCTAATGACTTAAGTGCTACATCAGAAGAATT
ACTAGCTTCTATAAAAAACATAGTAGAAGTAATTAACAATGTAGCAGATGCCGCTAATGAGGGAGCTAAAGATACTACTA
ATATAGCTCAAAATAATGAAAAGATTGTAATAGCTAGTGAAGATATTGTTAAATCTACAGATTTATTAAAAAATAGTTCA
CAGAAATTAATAAATTCTGTCACAAAATTTAAAATTTAA

Upstream 100 bases:

>100_bases
GGATAATTATTATTTGGTAATAATGAATAGAGTGAATGATGTTATAATAAACAATCTTTAATTTTATCAATAAATAAGAA
GGACTTTAGGAGGACGGGTT

Downstream 100 bases:

>100_bases
TAAACAGAGTTCTTGGCTTCAGAGGGAGTTTTTACTCCCACTAAAGCTTAGAAATCGTTATCCAGGGACGTGACCGCTCT
TTACCCCCACTTTGAAGAAG

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 572; Mature: 572

Protein sequence:

>572_residues
MENLKVKNKILFMSSIMLIFTIIVGITGYYFNAKSNKAIKKLYEDNLISVKVLNDARAQARGAEADVARIVILSKDVKTQ
EKLKKDIESRVEKFNKDIEEFKSIGLNSEKEKELLDYMEKNLNEFRQRREEVFKVAKEGKMDLAAKKFSELNEVNENYQK
ALIELSDFNVKEAEEFKIQNDRANAFSNRFITIILSLSIVIALVTTNIISKSIINPLKESVEYLDKLSTGNFTEKVSDKL
LKRKDEVGQLANAVSKMYGSIRNIINDVLNEMSNSSNVVENIDENINDLNKRIQEASTATEELSASMEETGASAEEMSAT
SEEIEKAVEDIALKAEEGASSAGKILTKVEELKSDAIKSQKNANKVKANIDSATKDAIEKSKTIEEINVLSEAILEITSQ
TNLLALNAAIEAARAGESGKGFAVVAEEIRKLAEQSSQTVVRIQDTTKEVLKAVEDLKKNSSNALNFIDSYIVKAHQDTV
EVFDSYSKDATYYNDISNDLSATSEELLASIKNIVEVINNVADAANEGAKDTTNIAQNNEKIVIASEDIVKSTDLLKNSS
QKLINSVTKFKI

Sequences:

>Translated_572_residues
MENLKVKNKILFMSSIMLIFTIIVGITGYYFNAKSNKAIKKLYEDNLISVKVLNDARAQARGAEADVARIVILSKDVKTQ
EKLKKDIESRVEKFNKDIEEFKSIGLNSEKEKELLDYMEKNLNEFRQRREEVFKVAKEGKMDLAAKKFSELNEVNENYQK
ALIELSDFNVKEAEEFKIQNDRANAFSNRFITIILSLSIVIALVTTNIISKSIINPLKESVEYLDKLSTGNFTEKVSDKL
LKRKDEVGQLANAVSKMYGSIRNIINDVLNEMSNSSNVVENIDENINDLNKRIQEASTATEELSASMEETGASAEEMSAT
SEEIEKAVEDIALKAEEGASSAGKILTKVEELKSDAIKSQKNANKVKANIDSATKDAIEKSKTIEEINVLSEAILEITSQ
TNLLALNAAIEAARAGESGKGFAVVAEEIRKLAEQSSQTVVRIQDTTKEVLKAVEDLKKNSSNALNFIDSYIVKAHQDTV
EVFDSYSKDATYYNDISNDLSATSEELLASIKNIVEVINNVADAANEGAKDTTNIAQNNEKIVIASEDIVKSTDLLKNSS
QKLINSVTKFKI
>Mature_572_residues
MENLKVKNKILFMSSIMLIFTIIVGITGYYFNAKSNKAIKKLYEDNLISVKVLNDARAQARGAEADVARIVILSKDVKTQ
EKLKKDIESRVEKFNKDIEEFKSIGLNSEKEKELLDYMEKNLNEFRQRREEVFKVAKEGKMDLAAKKFSELNEVNENYQK
ALIELSDFNVKEAEEFKIQNDRANAFSNRFITIILSLSIVIALVTTNIISKSIINPLKESVEYLDKLSTGNFTEKVSDKL
LKRKDEVGQLANAVSKMYGSIRNIINDVLNEMSNSSNVVENIDENINDLNKRIQEASTATEELSASMEETGASAEEMSAT
SEEIEKAVEDIALKAEEGASSAGKILTKVEELKSDAIKSQKNANKVKANIDSATKDAIEKSKTIEEINVLSEAILEITSQ
TNLLALNAAIEAARAGESGKGFAVVAEEIRKLAEQSSQTVVRIQDTTKEVLKAVEDLKKNSSNALNFIDSYIVKAHQDTV
EVFDSYSKDATYYNDISNDLSATSEELLASIKNIVEVINNVADAANEGAKDTTNIAQNNEKIVIASEDIVKSTDLLKNSS
QKLINSVTKFKI

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=312, Percent_Identity=30.4487179487179, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787690, Length=290, Percent_Identity=29.3103448275862, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI1789453, Length=241, Percent_Identity=32.3651452282158, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788194, Length=393, Percent_Identity=27.4809160305344, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1788195, Length=248, Percent_Identity=31.4516129032258, Blast_Score=88, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004010
- InterPro:   IPR003122
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR022094 [H]

Pfam domain/function: PF02743 Cache_1; PF00672 HAMP; PF12332 McpA_N; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 63512; Mature: 63512

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2 ; PS50192 T_SNARE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLKVKNKILFMSSIMLIFTIIVGITGYYFNAKSNKAIKKLYEDNLISVKVLNDARAQA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHCCCEEEEEECHHHHHH
RGAEADVARIVILSKDVKTQEKLKKDIESRVEKFNKDIEEFKSIGLNSEKEKELLDYMEK
CCCCHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
NLNEFRQRREEVFKVAKEGKMDLAAKKFSELNEVNENYQKALIELSDFNVKEAEEFKIQN
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCC
DRANAFSNRFITIILSLSIVIALVTTNIISKSIINPLKESVEYLDKLSTGNFTEKVSDKL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LKRKDEVGQLANAVSKMYGSIRNIINDVLNEMSNSSNVVENIDENINDLNKRIQEASTAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EELSASMEETGASAEEMSATSEEIEKAVEDIALKAEEGASSAGKILTKVEELKSDAIKSQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
KNANKVKANIDSATKDAIEKSKTIEEINVLSEAILEITSQTNLLALNAAIEAARAGESGK
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCC
GFAVVAEEIRKLAEQSSQTVVRIQDTTKEVLKAVEDLKKNSSNALNFIDSYIVKAHQDTV
CHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
EVFDSYSKDATYYNDISNDLSATSEELLASIKNIVEVINNVADAANEGAKDTTNIAQNNE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC
KIVIASEDIVKSTDLLKNSSQKLINSVTKFKI
EEEEECHHHHHHHHHHHCHHHHHHHHHHHCCC
>Mature Secondary Structure
MENLKVKNKILFMSSIMLIFTIIVGITGYYFNAKSNKAIKKLYEDNLISVKVLNDARAQA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHCCCEEEEEECHHHHHH
RGAEADVARIVILSKDVKTQEKLKKDIESRVEKFNKDIEEFKSIGLNSEKEKELLDYMEK
CCCCHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
NLNEFRQRREEVFKVAKEGKMDLAAKKFSELNEVNENYQKALIELSDFNVKEAEEFKIQN
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCC
DRANAFSNRFITIILSLSIVIALVTTNIISKSIINPLKESVEYLDKLSTGNFTEKVSDKL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LKRKDEVGQLANAVSKMYGSIRNIINDVLNEMSNSSNVVENIDENINDLNKRIQEASTAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EELSASMEETGASAEEMSATSEEIEKAVEDIALKAEEGASSAGKILTKVEELKSDAIKSQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
KNANKVKANIDSATKDAIEKSKTIEEINVLSEAILEITSQTNLLALNAAIEAARAGESGK
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCC
GFAVVAEEIRKLAEQSSQTVVRIQDTTKEVLKAVEDLKKNSSNALNFIDSYIVKAHQDTV
CHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
EVFDSYSKDATYYNDISNDLSATSEELLASIKNIVEVINNVADAANEGAKDTTNIAQNNE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC
KIVIASEDIVKSTDLLKNSSQKLINSVTKFKI
EEEEECHHHHHHHHHHHCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA