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The map label for this gene is xp55 [H]

Identifier: 226948635

GI number: 226948635

Start: 1590122

End: 1591711

Strand: Direct

Name: xp55 [H]

Synonym: CLM_1530

Alternate gene names: 226948635

Gene position: 1590122-1591711 (Clockwise)

Preceding gene: 226948634

Following gene: 226948636

Centisome position: 38.27

GC content: 30.57

Gene sequence:

>1590_bases
ATGAAAAAAATGAAATCAATTAAAAAAGCTACGGTTATGTTGTTAATTGTGTTATTTACATTGCCAATAATATTTACTGG
TTGCTCAAGCAAAAAAGAACAAGCAGAAAAAGATGATAAAAAAGGCAAGACAGTAGTTTATGGTGCAGAATTTGAAGATG
AAAAATTAAATCCTGTATTAGCGCCTGCCTATGCTAATGATTTAATTTTTAGAGGTCTTATGAGATTTGATAAAGATAAT
AAGCCGCAATGTGATATTGCAGAATCTTATAAGAAATCCACAGATGGGCTAACCTATGATTTCAAAATTAAAAAAGGTGT
AAAATTCCATGATGGAAAAGAACTTAAATCGGAGGATGTTGTATTTACGATAAAGTCAATACAAGATCCTAAGGTCAATA
CAGAAATGAAACCAGAATTTGAAGAAGTAAAGGATATAAAAGCCGAAGGGGATTATAATGTTAAAGTCACATTAGCTAAG
CCTTTTCCAGCACTTTTAGACAAGTTAACAATTGGAATAGTTCCAAAGCATGCTCTAGAAGGAAAAGATTTAAATAATGC
AGAGTTTAATCAAAAGCCAATAGGAGCAGGACCATTTAAATTTGTAAAATGGGAAAAAGGTAACAATATAACGTTATCAA
AATTTGAAGAATATTATGGTAAAGACAAAACAGGAAATGTAGAAAAGTTTATATTTAAATTTATACCAGACTATAATGTA
CGTGCTATGCAACTTGAAACAGGAGAGATTGATTTAGCTTATGTAGAGCCAAGTCAAGTAGCTAAACTAGAAAAATTAGA
AAAAATAAAAATATATAATGAAAATACAGCAGACTATAGATGCTTTATGTTTAATATGAGAAAAGAATTATGGAAGGATG
TTAATGTTCGTAAAGCATTTAACTATGCAGTAGATAGACAAGGTATGGTAGATGGAATATTAAAAGGTTTTGGAGTAGAA
GCCTATTCTCCACTTCAAAAGAATAAATTTAATAATGCTAATGTAGAAAAGTATTCTTATAATTTAGAAAAAGCTAATGA
ATTGTTGGATAAAGCAGGTTGGAAAAAAGGACAAGATGGTATACGAGAAAAGGATGGAAAGAAATTTGAATTTACTTTAA
CTGCACCAAGTACTGATGAAGTTAGAGTAAAAATAGCTAATTACTTAGCTTCTCAATTTAAGAAAATAGGAGTTACTGTT
AAAGTTGCAGCACTAGATTGGAATGCTATAAAAATAGATGAATGTGAAGCTTTTGTGTTAGGTTGGGGCAGCCCATATGA
TGCAGATGATCATACATATAAATTATTCCATTCAAGCCAAATAAAGAATGGTAACAATTTTGGAGCTTATTCAAATCCTA
AAGTAGATAAATTATTAGAAGAGGGAAGAACTACAGAAGATGAAGAAAAGAGAAAAGAAATATATGGCAAACTTCAAGAA
GAATTAGCCAATGATCCACCATATAATTTTGAAATTTATGTAAACGCTATATATGCTGTAAACAAAAAGGTTACAGGAAT
AAAGGAAAAGATATTAGGACACCACGGAGCTGGATTCATATGGAATGCGGAGGAGTGGAAGGTTCAATGA

Upstream 100 bases:

>100_bases
AAAATTTAACAGAATTTGATACTTTAAACATTGGCATGGATTTTGCTTATTAATATATATGTGCATAAAATATATTAATT
TTAGGAGAAAGGAAGGCAAC

Downstream 100 bases:

>100_bases
CCTCAAGATATATACTAAAGAGATTAGGACAGGGTATATTGATTATATTTTTTCTAAGTATAATATCCTTTCTTATCATA
AATGCTGCGCCGGGAGATCC

Product: peptide/opine/nickel uptake ABC transporter substrate-binding protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MKKMKSIKKATVMLLIVLFTLPIIFTGCSSKKEQAEKDDKKGKTVVYGAEFEDEKLNPVLAPAYANDLIFRGLMRFDKDN
KPQCDIAESYKKSTDGLTYDFKIKKGVKFHDGKELKSEDVVFTIKSIQDPKVNTEMKPEFEEVKDIKAEGDYNVKVTLAK
PFPALLDKLTIGIVPKHALEGKDLNNAEFNQKPIGAGPFKFVKWEKGNNITLSKFEEYYGKDKTGNVEKFIFKFIPDYNV
RAMQLETGEIDLAYVEPSQVAKLEKLEKIKIYNENTADYRCFMFNMRKELWKDVNVRKAFNYAVDRQGMVDGILKGFGVE
AYSPLQKNKFNNANVEKYSYNLEKANELLDKAGWKKGQDGIREKDGKKFEFTLTAPSTDEVRVKIANYLASQFKKIGVTV
KVAALDWNAIKIDECEAFVLGWGSPYDADDHTYKLFHSSQIKNGNNFGAYSNPKVDKLLEEGRTTEDEEKRKEIYGKLQE
ELANDPPYNFEIYVNAIYAVNKKVTGIKEKILGHHGAGFIWNAEEWKVQ

Sequences:

>Translated_529_residues
MKKMKSIKKATVMLLIVLFTLPIIFTGCSSKKEQAEKDDKKGKTVVYGAEFEDEKLNPVLAPAYANDLIFRGLMRFDKDN
KPQCDIAESYKKSTDGLTYDFKIKKGVKFHDGKELKSEDVVFTIKSIQDPKVNTEMKPEFEEVKDIKAEGDYNVKVTLAK
PFPALLDKLTIGIVPKHALEGKDLNNAEFNQKPIGAGPFKFVKWEKGNNITLSKFEEYYGKDKTGNVEKFIFKFIPDYNV
RAMQLETGEIDLAYVEPSQVAKLEKLEKIKIYNENTADYRCFMFNMRKELWKDVNVRKAFNYAVDRQGMVDGILKGFGVE
AYSPLQKNKFNNANVEKYSYNLEKANELLDKAGWKKGQDGIREKDGKKFEFTLTAPSTDEVRVKIANYLASQFKKIGVTV
KVAALDWNAIKIDECEAFVLGWGSPYDADDHTYKLFHSSQIKNGNNFGAYSNPKVDKLLEEGRTTEDEEKRKEIYGKLQE
ELANDPPYNFEIYVNAIYAVNKKVTGIKEKILGHHGAGFIWNAEEWKVQ
>Mature_529_residues
MKKMKSIKKATVMLLIVLFTLPIIFTGCSSKKEQAEKDDKKGKTVVYGAEFEDEKLNPVLAPAYANDLIFRGLMRFDKDN
KPQCDIAESYKKSTDGLTYDFKIKKGVKFHDGKELKSEDVVFTIKSIQDPKVNTEMKPEFEEVKDIKAEGDYNVKVTLAK
PFPALLDKLTIGIVPKHALEGKDLNNAEFNQKPIGAGPFKFVKWEKGNNITLSKFEEYYGKDKTGNVEKFIFKFIPDYNV
RAMQLETGEIDLAYVEPSQVAKLEKLEKIKIYNENTADYRCFMFNMRKELWKDVNVRKAFNYAVDRQGMVDGILKGFGVE
AYSPLQKNKFNNANVEKYSYNLEKANELLDKAGWKKGQDGIREKDGKKFEFTLTAPSTDEVRVKIANYLASQFKKIGVTV
KVAALDWNAIKIDECEAFVLGWGSPYDADDHTYKLFHSSQIKNGNNFGAYSNPKVDKLLEEGRTTEDEEKRKEIYGKLQE
ELANDPPYNFEIYVNAIYAVNKKVTGIKEKILGHHGAGFIWNAEEWKVQ

Specific function: Required for transport of an unidentified substrate [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789966, Length=524, Percent_Identity=26.1450381679389, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1787052, Length=474, Percent_Identity=25.3164556962025, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1789887, Length=453, Percent_Identity=24.5033112582781, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1787762, Length=437, Percent_Identity=27.2311212814645, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1789397, Length=451, Percent_Identity=24.6119733924612, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1787495, Length=498, Percent_Identity=24.2971887550201, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI87082063, Length=433, Percent_Identity=22.1709006928406, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787551, Length=433, Percent_Identity=22.8637413394919, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1786256, Length=156, Percent_Identity=28.2051282051282, Blast_Score=76, Evalue=6e-15,

Paralogues:

None

Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60462; Mature: 60462

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00092 N6_MTASE ; PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMKSIKKATVMLLIVLFTLPIIFTGCSSKKEQAEKDDKKGKTVVYGAEFEDEKLNPVL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEE
APAYANDLIFRGLMRFDKDNKPQCDIAESYKKSTDGLTYDFKIKKGVKFHDGKELKSEDV
CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCEECCCCCCCCCCE
VFTIKSIQDPKVNTEMKPEFEEVKDIKAEGDYNVKVTLAKPFPALLDKLTIGIVPKHALE
EEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCHHCC
GKDLNNAEFNQKPIGAGPFKFVKWEKGNNITLSKFEEYYGKDKTGNVEKFIFKFIPDYNV
CCCCCCCCCCCCCCCCCCCEEEEEECCCCEEHHHHHHHHCCCCCCCHHHHHHHHCCCCCE
RAMQLETGEIDLAYVEPSQVAKLEKLEKIKIYNENTADYRCFMFNMRKELWKDVNVRKAF
EEEEEECCCEEEEEECHHHHHHHHHHHEEEEECCCCCCEEEEEHHHHHHHHHCCCHHHHH
NYAVDRQGMVDGILKGFGVEAYSPLQKNKFNNANVEKYSYNLEKANELLDKAGWKKGQDG
HHHHCCCCHHHHHHHHCCCCCCCCHHHCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCC
IREKDGKKFEFTLTAPSTDEVRVKIANYLASQFKKIGVTVKVAALDWNAIKIDECEAFVL
CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEECCCCEEEE
GWGSPYDADDHTYKLFHSSQIKNGNNFGAYSNPKVDKLLEEGRTTEDEEKRKEIYGKLQE
ECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
ELANDPPYNFEIYVNAIYAVNKKVTGIKEKILGHHGAGFIWNAEEWKVQ
HHCCCCCCCEEEEEEEEEEECCCHHHHHHHHHCCCCCCEEECCHHCCCC
>Mature Secondary Structure
MKKMKSIKKATVMLLIVLFTLPIIFTGCSSKKEQAEKDDKKGKTVVYGAEFEDEKLNPVL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEE
APAYANDLIFRGLMRFDKDNKPQCDIAESYKKSTDGLTYDFKIKKGVKFHDGKELKSEDV
CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCEECCCCCCCCCCE
VFTIKSIQDPKVNTEMKPEFEEVKDIKAEGDYNVKVTLAKPFPALLDKLTIGIVPKHALE
EEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCHHCC
GKDLNNAEFNQKPIGAGPFKFVKWEKGNNITLSKFEEYYGKDKTGNVEKFIFKFIPDYNV
CCCCCCCCCCCCCCCCCCCEEEEEECCCCEEHHHHHHHHCCCCCCCHHHHHHHHCCCCCE
RAMQLETGEIDLAYVEPSQVAKLEKLEKIKIYNENTADYRCFMFNMRKELWKDVNVRKAF
EEEEEECCCEEEEEECHHHHHHHHHHHEEEEECCCCCCEEEEEHHHHHHHHHCCCHHHHH
NYAVDRQGMVDGILKGFGVEAYSPLQKNKFNNANVEKYSYNLEKANELLDKAGWKKGQDG
HHHHCCCCHHHHHHHHCCCCCCCCHHHCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCC
IREKDGKKFEFTLTAPSTDEVRVKIANYLASQFKKIGVTVKVAALDWNAIKIDECEAFVL
CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEECCCCEEEE
GWGSPYDADDHTYKLFHSSQIKNGNNFGAYSNPKVDKLLEEGRTTEDEEKRKEIYGKLQE
ECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
ELANDPPYNFEIYVNAIYAVNKKVTGIKEKILGHHGAGFIWNAEEWKVQ
HHCCCCCCCEEEEEEEEEEECCCHHHHHHHHHCCCCCCEEECCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]