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The map label for this gene is yvrB [H]

Identifier: 226948620

GI number: 226948620

Start: 1572326

End: 1573324

Strand: Direct

Name: yvrB [H]

Synonym: CLM_1515

Alternate gene names: 226948620

Gene position: 1572326-1573324 (Clockwise)

Preceding gene: 226948619

Following gene: 226948621

Centisome position: 37.84

GC content: 30.73

Gene sequence:

>999_bases
ATGAAAAAAAAGAGTTTATTCATTGGGTTAATAATAATTACTATAGTGGCTTCTTTAGTTTCCATAACTATTGGAGCTGC
TAGTATAACCCCTTTTAAAGTTATAGAGGTTATTTTAAATAAATTTATAGGAAATATAAATGATTCTATACTCCAAAAGA
TAATATGGGATATAAGAATGCCAAGAATAATACTTGCAGCTTTGGTAGGCATAGGTTTATCTGTTACAGGGACATCTTTT
CAAGGGATATTTAAAAACTCTATGGCAGATCCTTATGTTCTTGGAATATCTTCAGGAGCAGCACTTGGAGCAACTATATC
TATAGTTTATAAATTAGAGACAAAAGGAGCTTTGGTAACAACTTTATGTGCATTTATAGGAGCTATTTTAACTATTTTTA
TAGTTTATAATATAGCCAGAGTAGGAAATAAAATTCCAACCACCACATTATTATTAGCAGGGATAGCTTTGAACTTCTTT
ATGTCCTCTTTAATTTCAATGTCAATGATATTACATAAAGAGGCTATAGACAGAATTGTTTATTGGACAATGGGTAGCTT
GGGAAATGCTTCTTATAAACAAATTTATTTTTTAGCTCCGATAGTTATAATAATAACGTTTATTTTTTATTATAACTATA
GAGCGTTAAATATAATGGCCGGAGGAGAAGAGAGTGCATATATACTAGGGATAGATAGTGAAAAGTTTAAAAAGAAAATG
ATAGTTTTAAGTTCAATAATCGTAGCAGCAATAGTATCTGTTAGTGGAATAATAGGATTTGTAGGACTAATTGTTCCTCA
TATAGCAAGACTTATAGTAGGAGCTAACCATAGAGAAGTGATTCCCTTTTCAATGGTTTTAGGAGCTTTATTTTTAATAA
TATGTGATGCATTAGCAAGAGGTATAATGCCACCTATAGAATTACCAGTAGGTGCTGTTACAAGTTGCTTTGGAGCACCT
TATTTTATGTATTTGCTTTGGAAGAAGAAAAGAGGGTAA

Upstream 100 bases:

>100_bases
GTTATTAAGACAAGGCCCAAGGCAAGCCGATGGATTAGAAGCATTAGCAAAGATTATTCATCCTGAAGCATTCAAATAAT
CAATAATGAGGGGACATTAA

Downstream 100 bases:

>100_bases
AAATGGATTTTTTAAGTTTAAAAAATATTTCCTATAGAAATGGAAGTACTGAAATATTAAAAGAATTAAATATAGATTTT
CAAAGAGGACAATTTTATGT

Product: iron chelate uptake ABC transporter permease

Products: ADP; phosphate; cob(I)alamin [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MKKKSLFIGLIIITIVASLVSITIGAASITPFKVIEVILNKFIGNINDSILQKIIWDIRMPRIILAALVGIGLSVTGTSF
QGIFKNSMADPYVLGISSGAALGATISIVYKLETKGALVTTLCAFIGAILTIFIVYNIARVGNKIPTTTLLLAGIALNFF
MSSLISMSMILHKEAIDRIVYWTMGSLGNASYKQIYFLAPIVIIITFIFYYNYRALNIMAGGEESAYILGIDSEKFKKKM
IVLSSIIVAAIVSVSGIIGFVGLIVPHIARLIVGANHREVIPFSMVLGALFLIICDALARGIMPPIELPVGAVTSCFGAP
YFMYLLWKKKRG

Sequences:

>Translated_332_residues
MKKKSLFIGLIIITIVASLVSITIGAASITPFKVIEVILNKFIGNINDSILQKIIWDIRMPRIILAALVGIGLSVTGTSF
QGIFKNSMADPYVLGISSGAALGATISIVYKLETKGALVTTLCAFIGAILTIFIVYNIARVGNKIPTTTLLLAGIALNFF
MSSLISMSMILHKEAIDRIVYWTMGSLGNASYKQIYFLAPIVIIITFIFYYNYRALNIMAGGEESAYILGIDSEKFKKKM
IVLSSIIVAAIVSVSGIIGFVGLIVPHIARLIVGANHREVIPFSMVLGALFLIICDALARGIMPPIELPVGAVTSCFGAP
YFMYLLWKKKRG
>Mature_332_residues
MKKKSLFIGLIIITIVASLVSITIGAASITPFKVIEVILNKFIGNINDSILQKIIWDIRMPRIILAALVGIGLSVTGTSF
QGIFKNSMADPYVLGISSGAALGATISIVYKLETKGALVTTLCAFIGAILTIFIVYNIARVGNKIPTTTLLLAGIALNFF
MSSLISMSMILHKEAIDRIVYWTMGSLGNASYKQIYFLAPIVIIITFIFYYNYRALNIMAGGEESAYILGIDSEKFKKKM
IVLSSIIVAAIVSVSGIIGFVGLIVPHIARLIVGANHREVIPFSMVLGALFLIICDALARGIMPPIELPVGAVTSCFGAP
YFMYLLWKKKRG

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788004, Length=279, Percent_Identity=33.3333333333333, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1790741, Length=282, Percent_Identity=31.9148936170213, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1790740, Length=270, Percent_Identity=32.5925925925926, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1786805, Length=319, Percent_Identity=30.7210031347962, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1786347, Length=277, Percent_Identity=32.4909747292419, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1786804, Length=325, Percent_Identity=27.6923076923077, Blast_Score=99, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 35953; Mature: 35953

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKSLFIGLIIITIVASLVSITIGAASITPFKVIEVILNKFIGNINDSILQKIIWDIRM
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
PRIILAALVGIGLSVTGTSFQGIFKNSMADPYVLGISSGAALGATISIVYKLETKGALVT
HHHHHHHHHHCCCEECCCCHHHHHHHCCCCCEEEEECCCCHHCEEEEEEEEECCCCHHHH
TLCAFIGAILTIFIVYNIARVGNKIPTTTLLLAGIALNFFMSSLISMSMILHKEAIDRIV
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YWTMGSLGNASYKQIYFLAPIVIIITFIFYYNYRALNIMAGGEESAYILGIDSEKFKKKM
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCHHHHHHHH
IVLSSIIVAAIVSVSGIIGFVGLIVPHIARLIVGANHREVIPFSMVLGALFLIICDALAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
GIMPPIELPVGAVTSCFGAPYFMYLLWKKKRG
CCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure
MKKKSLFIGLIIITIVASLVSITIGAASITPFKVIEVILNKFIGNINDSILQKIIWDIRM
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
PRIILAALVGIGLSVTGTSFQGIFKNSMADPYVLGISSGAALGATISIVYKLETKGALVT
HHHHHHHHHHCCCEECCCCHHHHHHHCCCCCEEEEECCCCHHCEEEEEEEEECCCCHHHH
TLCAFIGAILTIFIVYNIARVGNKIPTTTLLLAGIALNFFMSSLISMSMILHKEAIDRIV
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YWTMGSLGNASYKQIYFLAPIVIIITFIFYYNYRALNIMAGGEESAYILGIDSEKFKKKM
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCHHHHHHHH
IVLSSIIVAAIVSVSGIIGFVGLIVPHIARLIVGANHREVIPFSMVLGALFLIICDALAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
GIMPPIELPVGAVTSCFGAPYFMYLLWKKKRG
CCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; cob(I)alamin [Periplasm]; H2O [C]

Specific reaction: ATP + cob(I)alamin [Periplasm] + H2O = ADP + phosphate + cob(I)alamin [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]