Click here to switch to the map view.

The map label for this gene is yvrC [H]

Identifier: 226948619

GI number: 226948619

Start: 1571390

End: 1572304

Strand: Direct

Name: yvrC [H]

Synonym: CLM_1514

Alternate gene names: 226948619

Gene position: 1571390-1572304 (Clockwise)

Preceding gene: 226948618

Following gene: 226948620

Centisome position: 37.82

GC content: 30.71

Gene sequence:

>915_bases
ATGAAAGGTTTAAAAAGAAGAGTATCGATTATTATTTGTATTATGTTAGCTTTTATGCTAGTATCATGCAATTTAAAGAA
GGGAGAAAATAAAGAAACACAAAAAAATATAAAAATTACAGATTCCTATGGAAAAGAGTTAGCTTTTGAAAAAGCTCCAG
AAAGAATAGTTAGTCTTTCACCTGGAGCAACGGAAACCATATATGCCTTAAATAAAGAAAATACATTAGTTGGAAGATCT
GATTTTGATGACTATCCAACAGCAGTTAGCAAAATAAAATCAGTTGGTGGAGTAAAAGATCCAAGTATAGAAAAAATAAC
TGAACTAAAGCCAGATTTAGTTATAGGTGGAGCTCATTTTTCAAAAGATACTGTGAAAAAACTTGAAGACTTGGGCATTA
AAGTAGCAGTGCTTTATGGTGCAGAGGATCTAGATGGAGCTTATAAAAACATAATGGATATTTCTACTATATTAGGAGTA
ACTGAAAAAGGCCAAACTATAGTTGATGGTATGAAAAAGAAGGTTGAAAGTGTTGAGAATAAGGTAAAATCATTAAATAA
ATCTAAGATTTACTATATGGTTGATTTTGGGAAAGCAGACTTTTCTGCTGGAGGAGATACTTTTATAGGTAAAATGATTG
AAAAAGCAGGTGGAGATAATATTGCTAAGGATACAAAGGGATGGAATTATTCTTTTGAAAAAATAGTTGAAAATAAGCCG
GAAATGATAATATTATCAGATAAATTTAACACTAAAAAGAATTTTTTAACTGCTGATAAGTATAAGGAGCTTCCCGCATC
AAAGGCTAATAAAGTATATGAAATTGATGATAACATGTTATTAAGACAAGGCCCAAGGCAAGCCGATGGATTAGAAGCAT
TAGCAAAGATTATTCATCCTGAAGCATTCAAATAA

Upstream 100 bases:

>100_bases
AGGTTATTGGAGCTTAAGAATACTTAAATATAAAAAATTAGGTATTAAAGCGTATTACATAAGAGATTAAACAATATATA
GAAAAGAAGGGATGTAAATC

Downstream 100 bases:

>100_bases
TCAATAATGAGGGGACATTAAATGAAAAAAAAGAGTTTATTCATTGGGTTAATAATAATTACTATAGTGGCTTCTTTAGT
TTCCATAACTATTGGAGCTG

Product: iron chelate uptake ABC transporter solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MKGLKRRVSIIICIMLAFMLVSCNLKKGENKETQKNIKITDSYGKELAFEKAPERIVSLSPGATETIYALNKENTLVGRS
DFDDYPTAVSKIKSVGGVKDPSIEKITELKPDLVIGGAHFSKDTVKKLEDLGIKVAVLYGAEDLDGAYKNIMDISTILGV
TEKGQTIVDGMKKKVESVENKVKSLNKSKIYYMVDFGKADFSAGGDTFIGKMIEKAGGDNIAKDTKGWNYSFEKIVENKP
EMIILSDKFNTKKNFLTADKYKELPASKANKVYEIDDNMLLRQGPRQADGLEALAKIIHPEAFK

Sequences:

>Translated_304_residues
MKGLKRRVSIIICIMLAFMLVSCNLKKGENKETQKNIKITDSYGKELAFEKAPERIVSLSPGATETIYALNKENTLVGRS
DFDDYPTAVSKIKSVGGVKDPSIEKITELKPDLVIGGAHFSKDTVKKLEDLGIKVAVLYGAEDLDGAYKNIMDISTILGV
TEKGQTIVDGMKKKVESVENKVKSLNKSKIYYMVDFGKADFSAGGDTFIGKMIEKAGGDNIAKDTKGWNYSFEKIVENKP
EMIILSDKFNTKKNFLTADKYKELPASKANKVYEIDDNMLLRQGPRQADGLEALAKIIHPEAFK
>Mature_304_residues
MKGLKRRVSIIICIMLAFMLVSCNLKKGENKETQKNIKITDSYGKELAFEKAPERIVSLSPGATETIYALNKENTLVGRS
DFDDYPTAVSKIKSVGGVKDPSIEKITELKPDLVIGGAHFSKDTVKKLEDLGIKVAVLYGAEDLDGAYKNIMDISTILGV
TEKGQTIVDGMKKKVESVENKVKSLNKSKIYYMVDFGKADFSAGGDTFIGKMIEKAGGDNIAKDTKGWNYSFEKIVENKP
EMIILSDKFNTKKNFLTADKYKELPASKANKVYEIDDNMLLRQGPRQADGLEALAKIIHPEAFK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=214, Percent_Identity=29.9065420560748, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 33651; Mature: 33651

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGLKRRVSIIICIMLAFMLVSCNLKKGENKETQKNIKITDSYGKELAFEKAPERIVSLS
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCEEEECCCCHHHHHHHCCHHHEECC
PGATETIYALNKENTLVGRSDFDDYPTAVSKIKSVGGVKDPSIEKITELKPDLVIGGAHF
CCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCC
SKDTVKKLEDLGIKVAVLYGAEDLDGAYKNIMDISTILGVTEKGQTIVDGMKKKVESVEN
CHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
KVKSLNKSKIYYMVDFGKADFSAGGDTFIGKMIEKAGGDNIAKDTKGWNYSFEKIVENKP
HHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCC
EMIILSDKFNTKKNFLTADKYKELPASKANKVYEIDDNMLLRQGPRQADGLEALAKIIHP
CEEEEECCCCCCHHCCCHHHHHHCCCCCCCCEEECCCCCHHHCCCCCCHHHHHHHHHHCC
EAFK
CCCC
>Mature Secondary Structure
MKGLKRRVSIIICIMLAFMLVSCNLKKGENKETQKNIKITDSYGKELAFEKAPERIVSLS
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCEEEECCCCHHHHHHHCCHHHEECC
PGATETIYALNKENTLVGRSDFDDYPTAVSKIKSVGGVKDPSIEKITELKPDLVIGGAHF
CCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCC
SKDTVKKLEDLGIKVAVLYGAEDLDGAYKNIMDISTILGVTEKGQTIVDGMKKKVESVEN
CHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
KVKSLNKSKIYYMVDFGKADFSAGGDTFIGKMIEKAGGDNIAKDTKGWNYSFEKIVENKP
HHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCC
EMIILSDKFNTKKNFLTADKYKELPASKANKVYEIDDNMLLRQGPRQADGLEALAKIIHP
CEEEEECCCCCCHHCCCHHHHHHCCCCCCCCEEECCCCCHHHCCCCCCHHHHHHHHHHCC
EAFK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]