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The map label for this gene is ycfX [C]

Identifier: 226948468

GI number: 226948468

Start: 1416941

End: 1417882

Strand: Direct

Name: ycfX [C]

Synonym: CLM_1354

Alternate gene names: 226948468

Gene position: 1416941-1417882 (Clockwise)

Preceding gene: 226948467

Following gene: 226948469

Centisome position: 34.1

GC content: 29.19

Gene sequence:

>942_bases
ATGGATAATAAGCATTATTTAAGTATAGATATTGGAGGAACTTTTATTAAATACGGAGTTTTAGATCATTCAGGTAATAT
TATTTCTAAAAATAAAAAAAGAACTTCAAGAAATATAGATGATTTACTATTCGATTTATCAGAAATAGTAGAAAAGCAAT
CTGAACATATAAGTGGTATTGGTATTAGTGCTCCAGGGAAAGTAGATACAAGGGAAGGAGTAATTTATGGAGGAGGTAAT
TTAACTTTTCTAGATAATTGGCCCATAGTATCAATTCTACAGGATAAATATAAAATCCCTGTAGCAGTAGAAAATGATGG
CAAGTCAGCAGCTCTTGCAGAGATGTGGTTAGGAAATTTACAAGATGTTGATGATGGTGCTGCAATTATACTTGGTACGG
GAATTGGAGGTGGAATAGTACTAAATAAAAAGCTAAGGAAAGGAAAGCATTATTCCGCAGGGGAGATTAGTTTTATGATA
AATAAATCAGAAGAAAAAAGTGATTTAAAGTTTCATGGATTTAATGCTTCAGCGGTAAGAATGGTAAAGACAATTGGAGA
ATATTTAGGATTATCAGATCCTTTAGATGGAGAAGCAGTGTTTAAATCTATTATTTCAGGTAATGATTTTGCAAATCAAG
TATTTATAAATTATTGTGATAGTATTGCTGAACTTATTAATAATATTCAATGTACTTTGGAGCTAGAGAAGTACGTAATA
GGTGGAGGAATTAGCACAAATAAAATATTAATTGAAGGAATTCAAAATTCATTTAATAGATTGAGAATGAGAGAGCCATT
ATTGCAAAAATCAATACACTGTCCAATTATTCAAGCTACAAAATTTAATAATGATGCTAATCTTTATGGAGCTTTGTATA
ATCTATTATTAGATGAAGAAACTATTGATATAATAAAAAATAATGAAAATATGGGAGATTAA

Upstream 100 bases:

>100_bases
AGAAGGACATTCATTTAACACTATTGTTTTAGAATAATTATTAAGAGGATGCCCGGATAAGGGCTTCCTTTTTCAAATAA
GCTAAAAGAGGGAAAATAAT

Downstream 100 bases:

>100_bases
TTATGAAAACGAATTTTCCAGAAAATTTTTTGTGGGGTGGTGCAGTTGCAGCTAACCAATGTGAAGGAGCTTATAATATT
GATGGTAAAGGATTAAGCGT

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MDNKHYLSIDIGGTFIKYGVLDHSGNIISKNKKRTSRNIDDLLFDLSEIVEKQSEHISGIGISAPGKVDTREGVIYGGGN
LTFLDNWPIVSILQDKYKIPVAVENDGKSAALAEMWLGNLQDVDDGAAIILGTGIGGGIVLNKKLRKGKHYSAGEISFMI
NKSEEKSDLKFHGFNASAVRMVKTIGEYLGLSDPLDGEAVFKSIISGNDFANQVFINYCDSIAELINNIQCTLELEKYVI
GGGISTNKILIEGIQNSFNRLRMREPLLQKSIHCPIIQATKFNNDANLYGALYNLLLDEETIDIIKNNENMGD

Sequences:

>Translated_313_residues
MDNKHYLSIDIGGTFIKYGVLDHSGNIISKNKKRTSRNIDDLLFDLSEIVEKQSEHISGIGISAPGKVDTREGVIYGGGN
LTFLDNWPIVSILQDKYKIPVAVENDGKSAALAEMWLGNLQDVDDGAAIILGTGIGGGIVLNKKLRKGKHYSAGEISFMI
NKSEEKSDLKFHGFNASAVRMVKTIGEYLGLSDPLDGEAVFKSIISGNDFANQVFINYCDSIAELINNIQCTLELEKYVI
GGGISTNKILIEGIQNSFNRLRMREPLLQKSIHCPIIQATKFNNDANLYGALYNLLLDEETIDIIKNNENMGD
>Mature_313_residues
MDNKHYLSIDIGGTFIKYGVLDHSGNIISKNKKRTSRNIDDLLFDLSEIVEKQSEHISGIGISAPGKVDTREGVIYGGGN
LTFLDNWPIVSILQDKYKIPVAVENDGKSAALAEMWLGNLQDVDDGAAIILGTGIGGGIVLNKKLRKGKHYSAGEISFMI
NKSEEKSDLKFHGFNASAVRMVKTIGEYLGLSDPLDGEAVFKSIISGNDFANQVFINYCDSIAELINNIQCTLELEKYVI
GGGISTNKILIEGIQNSFNRLRMREPLLQKSIHCPIIQATKFNNDANLYGALYNLLLDEETIDIIKNNENMGD

Specific function: Unknown

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1787363, Length=288, Percent_Identity=25, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786891, Length=327, Percent_Identity=23.8532110091743, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 34419; Mature: 34419

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNKHYLSIDIGGTFIKYGVLDHSGNIISKNKKRTSRNIDDLLFDLSEIVEKQSEHISGI
CCCCEEEEEEECCEEEEEEEEECCCCEECCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCC
GISAPGKVDTREGVIYGGGNLTFLDNWPIVSILQDKYKIPVAVENDGKSAALAEMWLGNL
CCCCCCCCCCCCCEEECCCEEEEEECCCCCEEECCCCCCCEEEECCCCCHHHHHHHHCCC
QDVDDGAAIILGTGIGGGIVLNKKLRKGKHYSAGEISFMINKSEEKSDLKFHGFNASAVR
CCCCCCCEEEEECCCCCCEEEEHHHHCCCCCCCCEEEEEEECCCCCCCCEEECCCHHHHH
MVKTIGEYLGLSDPLDGEAVFKSIISGNDFANQVFINYCDSIAELINNIQCTLELEKYVI
HHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEE
GGGISTNKILIEGIQNSFNRLRMREPLLQKSIHCPIIQATKFNNDANLYGALYNLLLDEE
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCC
TIDIIKNNENMGD
CEEEEECCCCCCC
>Mature Secondary Structure
MDNKHYLSIDIGGTFIKYGVLDHSGNIISKNKKRTSRNIDDLLFDLSEIVEKQSEHISGI
CCCCEEEEEEECCEEEEEEEEECCCCEECCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCC
GISAPGKVDTREGVIYGGGNLTFLDNWPIVSILQDKYKIPVAVENDGKSAALAEMWLGNL
CCCCCCCCCCCCCEEECCCEEEEEECCCCCEEECCCCCCCEEEECCCCCHHHHHHHHCCC
QDVDDGAAIILGTGIGGGIVLNKKLRKGKHYSAGEISFMINKSEEKSDLKFHGFNASAVR
CCCCCCCEEEEECCCCCCEEEEHHHHCCCCCCCCEEEEEEECCCCCCCCEEECCCHHHHH
MVKTIGEYLGLSDPLDGEAVFKSIISGNDFANQVFINYCDSIAELINNIQCTLELEKYVI
HHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEE
GGGISTNKILIEGIQNSFNRLRMREPLLQKSIHCPIIQATKFNNDANLYGALYNLLLDEE
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCC
TIDIIKNNENMGD
CEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842; 8177218 [H]