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The map label for this gene is qseB [H]

Identifier: 226947771

GI number: 226947771

Start: 671859

End: 672545

Strand: Direct

Name: qseB [H]

Synonym: CLM_0620

Alternate gene names: 226947771

Gene position: 671859-672545 (Clockwise)

Preceding gene: 226947770

Following gene: 226947772

Centisome position: 16.17

GC content: 26.78

Gene sequence:

>687_bases
ATGAAAAACATATTAGTTGTAGAGGATGATAATTTATTAAATAAAACTTTATCTTACAATTTAAAACAGGAAGGGTATAC
TGTAGATTGTGCTTTAATTAAGAGACAAGCTGTAGAATATATTAATAAAAAAGAATATGATCTTGTAATTTTAGATATAA
ATTTACCTGACGGAGATGGATTTGATTTATGCCCTAAGATTAAATCTAAGCATAAAAATACTGCAGTATTTTTTTTAACT
GCTAAGGACATGGAAAATGATATGATAAAAGGATTTGATCTAGGAGCAGATGACTATATTACAAAGCCTTTTCATATAAG
CGTATTTAAGAAAAAAGTTAAGGTATTATTTAATAAAATAAAGAATAAAGCACATGTAGATTGTTATGATGATGGGAAAC
TTTATATTAATTTTTCAAATTTAAAATCTACATTAAACGGGGAGCCTATTATATTTACACCAATGGAATATCGGACTTTA
AAAATATTAGTTAAAAACCCTAAAATAGTTTTGACAAGACAAATGCTTTTAGAAAAGATATGGGATGTGGATGAGAACTT
TGTGGACGAACATACTTTAACTACAGTTATTAGTCGTATTAGAAATAAAATAGAAGCAGAAGAAACTCAATATATTAAAA
CCGTATATGGAATGGGATATATGTGGATAGGTGATGACAGAAAATGA

Upstream 100 bases:

>100_bases
CTCATGAAATATTAATGAAATTAAAAGGTTTTTATTATGATTTATATACAACTTAATTATAAATATCACCATAAAATTAA
ATTTCCTAAGGAGCAATATT

Downstream 100 bases:

>100_bases
AATCAAAAAAGTTGTCTATTAAATACATTTGCTTACTGATATTTATTGGTGCTTTTTTAACATCAACTATTTTTATTATT
CCTGTATATATGATTACTAA

Product: regulatory protein VanR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MKNILVVEDDNLLNKTLSYNLKQEGYTVDCALIKRQAVEYINKKEYDLVILDINLPDGDGFDLCPKIKSKHKNTAVFFLT
AKDMENDMIKGFDLGADDYITKPFHISVFKKKVKVLFNKIKNKAHVDCYDDGKLYINFSNLKSTLNGEPIIFTPMEYRTL
KILVKNPKIVLTRQMLLEKIWDVDENFVDEHTLTTVISRIRNKIEAEETQYIKTVYGMGYMWIGDDRK

Sequences:

>Translated_228_residues
MKNILVVEDDNLLNKTLSYNLKQEGYTVDCALIKRQAVEYINKKEYDLVILDINLPDGDGFDLCPKIKSKHKNTAVFFLT
AKDMENDMIKGFDLGADDYITKPFHISVFKKKVKVLFNKIKNKAHVDCYDDGKLYINFSNLKSTLNGEPIIFTPMEYRTL
KILVKNPKIVLTRQMLLEKIWDVDENFVDEHTLTTVISRIRNKIEAEETQYIKTVYGMGYMWIGDDRK
>Mature_228_residues
MKNILVVEDDNLLNKTLSYNLKQEGYTVDCALIKRQAVEYINKKEYDLVILDINLPDGDGFDLCPKIKSKHKNTAVFFLT
AKDMENDMIKGFDLGADDYITKPFHISVFKKKVKVLFNKIKNKAHVDCYDDGKLYINFSNLKSTLNGEPIIFTPMEYRTL
KILVKNPKIVLTRQMLLEKIWDVDENFVDEHTLTTVISRIRNKIEAEETQYIKTVYGMGYMWIGDDRK

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790552, Length=223, Percent_Identity=33.6322869955157, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1789402, Length=218, Percent_Identity=31.651376146789, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1788394, Length=226, Percent_Identity=31.858407079646, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1790860, Length=222, Percent_Identity=31.981981981982, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1789809, Length=233, Percent_Identity=29.6137339055794, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787375, Length=221, Percent_Identity=30.7692307692308, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1786784, Length=220, Percent_Identity=30.9090909090909, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1786599, Length=222, Percent_Identity=29.7297297297297, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787229, Length=229, Percent_Identity=31.0043668122271, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1786911, Length=234, Percent_Identity=29.9145299145299, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1790863, Length=234, Percent_Identity=31.6239316239316, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082012, Length=223, Percent_Identity=28.2511210762332, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI2367329, Length=236, Percent_Identity=25.4237288135593, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI145693140, Length=235, Percent_Identity=27.2340425531915, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788713, Length=114, Percent_Identity=31.5789473684211, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26562; Mature: 26562

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNILVVEDDNLLNKTLSYNLKQEGYTVDCALIKRQAVEYINKKEYDLVILDINLPDGDG
CCCEEEEECCCHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
FDLCPKIKSKHKNTAVFFLTAKDMENDMIKGFDLGADDYITKPFHISVFKKKVKVLFNKI
CCCCCHHHCCCCCEEEEEEEECCCCCCHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHH
KNKAHVDCYDDGKLYINFSNLKSTLNGEPIIFTPMEYRTLKILVKNPKIVLTRQMLLEKI
CCCEEEEEEECCEEEEEEHHHHHHCCCCCEEECCCCCEEEEEEEECCCEEEEHHHHHHHH
WDVDENFVDEHTLTTVISRIRNKIEAEETQYIKTVYGMGYMWIGDDRK
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
>Mature Secondary Structure
MKNILVVEDDNLLNKTLSYNLKQEGYTVDCALIKRQAVEYINKKEYDLVILDINLPDGDG
CCCEEEEECCCHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
FDLCPKIKSKHKNTAVFFLTAKDMENDMIKGFDLGADDYITKPFHISVFKKKVKVLFNKI
CCCCCHHHCCCCCEEEEEEEECCCCCCHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHH
KNKAHVDCYDDGKLYINFSNLKSTLNGEPIIFTPMEYRTLKILVKNPKIVLTRQMLLEKI
CCCEEEEEEECCEEEEEEHHHHHHCCCCCEEECCCCCEEEEEEEECCCEEEEHHHHHHHH
WDVDENFVDEHTLTTVISRIRNKIEAEETQYIKTVYGMGYMWIGDDRK
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]