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The map label for this gene is recR

Identifier: 226947246

GI number: 226947246

Start: 34573

End: 35169

Strand: Direct

Name: recR

Synonym: CLM_0039

Alternate gene names: 226947246

Gene position: 34573-35169 (Clockwise)

Preceding gene: 226947245

Following gene: 226947247

Centisome position: 0.83

GC content: 30.32

Gene sequence:

>597_bases
TTGGATTTTTATCCTATAGCTATAGAAAAATTAATAGAAGAGTTCGCTAAATTACCGGGTATAGGTTATAAAACAGCTCA
AAGACTTACTCTATATGTACTAAATTTACCTAAAGAAGAGGTAAAGGAATTCTCAGAGGCTTTAGTAAAAGCTAGAGGTA
CAATTAAATATTGTTCTGTATGTGGTAATTTTACAGATAAAGATCCTTGTGCTATATGTAGTAATCCTAATAGGAATAAA
TCTATTATTTGTGTAATAGAACAACCTAAAGATATAATGTCTATGGAAAAAATAAGAGAATATAATGGAGTATATCATGT
ATTACATGGGAATATATCTCCTATGGCAGGAAGAGGTCCTGAAGACATAAAATTAAAAGAATTAATAAGAAGAATAGATG
GTAGTGTAAATGAAGTTATAGTTGCTACTAATCCTAATGTAGAAGGAGAAGCAACAGCTATGTATATATCTAAAATATTA
AAACCTCTAGGAGTTAAAGTTACAAGAATTGCCCACGGAGTACCAGTAGGTGGGGATTTAGAATATGCAGATGAGGTTAC
TTTAGCTAAAGCTTTAGAAGGAAGAATAGAATTATAA

Upstream 100 bases:

>100_bases
CTGAAGAAGACACTTCAAGCGAAGTGAAAAGATTAACTGGAGGAATGAACTTACCAGGAATGTTCTAAATTTAAGCTAAA
GTAAAACAGAGGTGAAAGAT

Downstream 100 bases:

>100_bases
AAAAATTTTATGAATATAAATCCCATTTTGTGTCTATTATTGAAATAGGAGATAAAATGGGAGGTTTTTTTATAATGAAA
AAATTAAATGATGGAAAAAA

Product: recombination protein RecR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MDFYPIAIEKLIEEFAKLPGIGYKTAQRLTLYVLNLPKEEVKEFSEALVKARGTIKYCSVCGNFTDKDPCAICSNPNRNK
SIICVIEQPKDIMSMEKIREYNGVYHVLHGNISPMAGRGPEDIKLKELIRRIDGSVNEVIVATNPNVEGEATAMYISKIL
KPLGVKVTRIAHGVPVGGDLEYADEVTLAKALEGRIEL

Sequences:

>Translated_198_residues
MDFYPIAIEKLIEEFAKLPGIGYKTAQRLTLYVLNLPKEEVKEFSEALVKARGTIKYCSVCGNFTDKDPCAICSNPNRNK
SIICVIEQPKDIMSMEKIREYNGVYHVLHGNISPMAGRGPEDIKLKELIRRIDGSVNEVIVATNPNVEGEATAMYISKIL
KPLGVKVTRIAHGVPVGGDLEYADEVTLAKALEGRIEL
>Mature_198_residues
MDFYPIAIEKLIEEFAKLPGIGYKTAQRLTLYVLNLPKEEVKEFSEALVKARGTIKYCSVCGNFTDKDPCAICSNPNRNK
SIICVIEQPKDIMSMEKIREYNGVYHVLHGNISPMAGRGPEDIKLKELIRRIDGSVNEVIVATNPNVEGEATAMYISKIL
KPLGVKVTRIAHGVPVGGDLEYADEVTLAKALEGRIEL

Specific function: May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO

COG id: COG0353

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain

Homologues:

Organism=Escherichia coli, GI1786678, Length=197, Percent_Identity=43.6548223350254, Blast_Score=170, Evalue=6e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECR_CLOB1 (A7FQ67)

Other databases:

- EMBL:   CP000726
- RefSeq:   YP_001382439.1
- ProteinModelPortal:   A7FQ67
- SMR:   A7FQ67
- STRING:   A7FQ67
- GeneID:   5396323
- GenomeReviews:   CP000726_GR
- KEGG:   cba:CLB_0044
- eggNOG:   COG0353
- HOGENOM:   HBG571744
- OMA:   HGAISPM
- ProtClustDB:   PRK00076
- BioCyc:   CBOT441770:CLB_0044-MONOMER
- HAMAP:   MF_00017
- InterPro:   IPR003583
- InterPro:   IPR000093
- InterPro:   IPR006171
- InterPro:   IPR015967
- SMART:   SM00278
- SMART:   SM00493
- TIGRFAMs:   TIGR00615

Pfam domain/function: PF02132 RecR; PF01751 Toprim; SSF111304 RecR

EC number: NA

Molecular weight: Translated: 21936; Mature: 21936

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS01300 RECR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFYPIAIEKLIEEFAKLPGIGYKTAQRLTLYVLNLPKEEVKEFSEALVKARGTIKYCSV
CCCCHHHHHHHHHHHHHCCCCCCHHHHEEEEEEEECCHHHHHHHHHHHHHHCCCHHHHHH
CGNFTDKDPCAICSNPNRNKSIICVIEQPKDIMSMEKIREYNGVYHVLHGNISPMAGRGP
HCCCCCCCCEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCC
EDIKLKELIRRIDGSVNEVIVATNPNVEGEATAMYISKILKPLGVKVTRIAHGVPVGGDL
CCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEHHHCCCCCCCCC
EYADEVTLAKALEGRIEL
CHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDFYPIAIEKLIEEFAKLPGIGYKTAQRLTLYVLNLPKEEVKEFSEALVKARGTIKYCSV
CCCCHHHHHHHHHHHHHCCCCCCHHHHEEEEEEEECCHHHHHHHHHHHHHHCCCHHHHHH
CGNFTDKDPCAICSNPNRNKSIICVIEQPKDIMSMEKIREYNGVYHVLHGNISPMAGRGP
HCCCCCCCCEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCCC
EDIKLKELIRRIDGSVNEVIVATNPNVEGEATAMYISKILKPLGVKVTRIAHGVPVGGDL
CCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEHHHCCCCCCCCC
EYADEVTLAKALEGRIEL
CHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA