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The map label for this gene is secY

Identifier: 226225157

GI number: 226225157

Start: 2661983

End: 2663278

Strand: Reverse

Name: secY

Synonym: Lm4b_02579

Alternate gene names: 226225157

Gene position: 2663278-2661983 (Counterclockwise)

Preceding gene: 226225158

Following gene: 226225156

Centisome position: 91.44

GC content: 38.04

Gene sequence:

>1296_bases
ATGTTTCAAACGTTAGTTAACTTCTTCAAAGTAGCAGACATCCGTAAAAAAATACTATTTACATTAGCAATGCTAGTTAT
TTTCCGTATTGGTACATTCGTGCCAGTACCGGGAGTTAACGCAGCAGCTTTACAATCTAGTATGGATGGCGGTATTTTGG
GGTTCTTAAATACATTTAATGGTGGGGCTTTAAAAAACTTCTCAATTTTTGCCATGGGTGTAATGCCTTACATTACATCT
TCCATTATTGTTCAGTTACTTCAAATGGACGTTGTTCCTAAATTGACTGAGTGGTCGAAGCAAGGGGAAATGGGTCGTAA
AAAACTCAATCAACTTACTAGATACATGACAATTGGACTTGGTTTAGTGGAAGCTTTCGGTATGGCATATGGATTTAACC
GCATGTCTTCAGCTGGCTTAGTAATTGAACCTTCCATTGGTAGATATGCAATTATCGCTATTGTATTGACTACTGGTACA
ATGTTCTTAATGTGGCTAGGTGAACAAATCACTGTTAAAGGCGTTGGTAATGGTGTTTCCATCATTATCTTTGCAGGTAT
CGTTGCTCGTATTCCTGATGGAGTTCGTCAATTATATGTTTCGCAAATTGAAAACGCTGGTGATCAACTTTTCCTACATG
TTCTGACATTAGTTGGTGTAGGGATTGCAATTTTAGCTATTGTTGTAGCTGTAATCTTCTTCCAACAAGCACTACGCAAA
ATTCCAATTCAATACTCTAAACGTGTAGCAGGAGCAAAACAATCGGGCGCGCAAGCAACGCACTTGCCGTTAAAACTTAA
CTCTGCCGGAGTTATCCCTGTTATCTTTGCAAGTGCATTTATTATTACACCACAAACTATCCTTACTTTCTTTGATCAAA
GTAACGATGTTGTAAAAGTATTGAAAGATGTGTTTGATTACACAAAACCAATTGGTATGATTTTATATGTTGCACTAATT
GTTGCTTTCACTTATTTCTATGCTTTCATTCAAGTGAACCCTGAGAAAGTTGCAGACAACTTGAAAAAGCAAGGTGGGTA
TATTCCTAGTAAACGTCCTGGTCGGGAAACACAAGCTTATCTTACATCGGTACTTTACCGTCTAACATTTGTTGGTGCAA
TTTTCCTTTCAGCGGTTGCTATACTTCCAACTATCGGTACTACTGTGTTTAGTTTACCGCAGTCACTTGCCGTTGGTGGT
ACAAGCCTACTAATTGTTATCGGGGTAGCATTAGATACTACGAAACAACTCGAAGGACAACTTGTAAAAAGGAACTATCG
GGGATTTATCAAATAA

Upstream 100 bases:

>100_bases
ATGGAAATATCGAGAAAAAACTTACTGTGAAAGCGAACAAATTCTCTGCAGCTGCGAAAGAAGCAATTGAAGCGGCTGGC
GGAAAAACTGAGGTGATCTA

Downstream 100 bases:

>100_bases
CACGCAGTTCTTGTTAGGTCTTCCTAGCAGGAGCTAGCGCGTAATAAGGGGCGAAACAGTTGAAATTAGTATTAATGGGA
CTGCCCGGCGCCGGAAAAGG

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MFQTLVNFFKVADIRKKILFTLAMLVIFRIGTFVPVPGVNAAALQSSMDGGILGFLNTFNGGALKNFSIFAMGVMPYITS
SIIVQLLQMDVVPKLTEWSKQGEMGRKKLNQLTRYMTIGLGLVEAFGMAYGFNRMSSAGLVIEPSIGRYAIIAIVLTTGT
MFLMWLGEQITVKGVGNGVSIIIFAGIVARIPDGVRQLYVSQIENAGDQLFLHVLTLVGVGIAILAIVVAVIFFQQALRK
IPIQYSKRVAGAKQSGAQATHLPLKLNSAGVIPVIFASAFIITPQTILTFFDQSNDVVKVLKDVFDYTKPIGMILYVALI
VAFTYFYAFIQVNPEKVADNLKKQGGYIPSKRPGRETQAYLTSVLYRLTFVGAIFLSAVAILPTIGTTVFSLPQSLAVGG
TSLLIVIGVALDTTKQLEGQLVKRNYRGFIK

Sequences:

>Translated_431_residues
MFQTLVNFFKVADIRKKILFTLAMLVIFRIGTFVPVPGVNAAALQSSMDGGILGFLNTFNGGALKNFSIFAMGVMPYITS
SIIVQLLQMDVVPKLTEWSKQGEMGRKKLNQLTRYMTIGLGLVEAFGMAYGFNRMSSAGLVIEPSIGRYAIIAIVLTTGT
MFLMWLGEQITVKGVGNGVSIIIFAGIVARIPDGVRQLYVSQIENAGDQLFLHVLTLVGVGIAILAIVVAVIFFQQALRK
IPIQYSKRVAGAKQSGAQATHLPLKLNSAGVIPVIFASAFIITPQTILTFFDQSNDVVKVLKDVFDYTKPIGMILYVALI
VAFTYFYAFIQVNPEKVADNLKKQGGYIPSKRPGRETQAYLTSVLYRLTFVGAIFLSAVAILPTIGTTVFSLPQSLAVGG
TSLLIVIGVALDTTKQLEGQLVKRNYRGFIK
>Mature_431_residues
MFQTLVNFFKVADIRKKILFTLAMLVIFRIGTFVPVPGVNAAALQSSMDGGILGFLNTFNGGALKNFSIFAMGVMPYITS
SIIVQLLQMDVVPKLTEWSKQGEMGRKKLNQLTRYMTIGLGLVEAFGMAYGFNRMSSAGLVIEPSIGRYAIIAIVLTTGT
MFLMWLGEQITVKGVGNGVSIIIFAGIVARIPDGVRQLYVSQIENAGDQLFLHVLTLVGVGIAILAIVVAVIFFQQALRK
IPIQYSKRVAGAKQSGAQATHLPLKLNSAGVIPVIFASAFIITPQTILTFFDQSNDVVKVLKDVFDYTKPIGMILYVALI
VAFTYFYAFIQVNPEKVADNLKKQGGYIPSKRPGRETQAYLTSVLYRLTFVGAIFLSAVAILPTIGTTVFSLPQSLAVGG
TSLLIVIGVALDTTKQLEGQLVKRNYRGFIK

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=429, Percent_Identity=41.7249417249417, Blast_Score=290, Evalue=1e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 46875; Mature: 46875

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCCC
>Mature Secondary Structure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HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1435726 [H]