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The map label for this gene is cggR [H]

Identifier: 226225008

GI number: 226225008

Start: 2505084

End: 2506130

Strand: Reverse

Name: cggR [H]

Synonym: Lm4b_02429

Alternate gene names: 226225008

Gene position: 2506130-2505084 (Counterclockwise)

Preceding gene: 226225009

Following gene: 226225007

Centisome position: 86.04

GC content: 42.5

Gene sequence:

>1047_bases
ATGTCAGACTTAATTAACATTCAGAAAAAGTTATTGCCCGACGTTTTGATGATTATGCAAAAACGCTACCAAATCCTACG
CTCGATTTATTTTTCTGAACCAGTTGGGAGACGGACACTTGCCGGAATGCTAGGCATGAGTGAACGCGTCCTGCGCGGCG
AAGTAGAATTTTTGAAAGCACAAGGTTTAGTAGAAATTGCTTCTTCCGGAATGACCGTTACTAAAGAAGGCTTGGTCGTT
TTTCGCGATTTGGAAAATGTCATGAATCAGCTTTCAGGGTTACATTCAATGGAAGAACAATTAGCGAAGAAATTGCAAAT
CAAAAAATGCTTGGTGGTGCAAGGTGATAGCGATGATACTCCATGGGTCCGCGAAGAAATGGGACGTGTGGCGGTTGAAC
AATTAGACATGGCGCTCACCGAAAAAAGAAACATCGTCGCAGTTATGGGCGGCTCTACAATGGCTACTGTTGCCGAAATG
ATGACAACTGATTTCGCAAAAGGCAGAGAACTACTTTTCGTTCCCGGTCGTGGAGGTATTGGTGAAGACCTTGACAATCA
AGCGAATACAATTTGTGATAAGATGGCAACAAAGACAAACACAAAACACCGCGTTCTCTATGTTCCGGAGCAATTAGGCG
AAGAAGCCTATCGTTCTTTACTGAAAGAACCGGCAATTCAAGAAGGCTTACGATTAGTACAATCTGCAAATGCTATTATT
TTAGGCATAGGTGATGCGCTCGCGATGGCGAAACGCAGACATACCGGCGAAGATGTACTTGAAAAAATCATCCGTCGTAA
AGCTGTAGGTGAAGCATTTGGTTATTATTTTGATGAACAAGGCGAGGTTGTACATAAGGTCCCTACATTCGGTCTTCAAT
TCGAAGACTTAGCGCAAATCCCGCACATTATCGCTGTTGCAGGCGGTACATCGAAAGCCAAAGCAATCAAATCGTATATG
AAAAGTGCTCCAAAAAATACGATTTTAATCACGGATGAAGGAGCAGCAAAATCGCTTTTAAAAGGGAGTAATACCCTTTT
GAAATAA

Upstream 100 bases:

>100_bases
GAAAGTTGTAAAAACCTCTATCTCTACTTTTTTTAGTTCTAACGGGACGTCAGATGACTAAGTGGGTCGTTAAGCGTCCA
AAGATGAGGAGCAATTAAAA

Downstream 100 bases:

>100_bases
AAAAACACTATTTTCAAGGAGGAAATTGACTTATGACAGTTAAAGTTGGTATTAATGGTTTTGGACGTATCGGACGTCTA
GCATTCCGTCGTATTCAAAA

Product: transcriptional regulator CggR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MSDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGMLGMSERVLRGEVEFLKAQGLVEIASSGMTVTKEGLVV
FRDLENVMNQLSGLHSMEEQLAKKLQIKKCLVVQGDSDDTPWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEM
MTTDFAKGRELLFVPGRGGIGEDLDNQANTICDKMATKTNTKHRVLYVPEQLGEEAYRSLLKEPAIQEGLRLVQSANAII
LGIGDALAMAKRRHTGEDVLEKIIRRKAVGEAFGYYFDEQGEVVHKVPTFGLQFEDLAQIPHIIAVAGGTSKAKAIKSYM
KSAPKNTILITDEGAAKSLLKGSNTLLK

Sequences:

>Translated_348_residues
MSDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGMLGMSERVLRGEVEFLKAQGLVEIASSGMTVTKEGLVV
FRDLENVMNQLSGLHSMEEQLAKKLQIKKCLVVQGDSDDTPWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEM
MTTDFAKGRELLFVPGRGGIGEDLDNQANTICDKMATKTNTKHRVLYVPEQLGEEAYRSLLKEPAIQEGLRLVQSANAII
LGIGDALAMAKRRHTGEDVLEKIIRRKAVGEAFGYYFDEQGEVVHKVPTFGLQFEDLAQIPHIIAVAGGTSKAKAIKSYM
KSAPKNTILITDEGAAKSLLKGSNTLLK
>Mature_347_residues
SDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGMLGMSERVLRGEVEFLKAQGLVEIASSGMTVTKEGLVVF
RDLENVMNQLSGLHSMEEQLAKKLQIKKCLVVQGDSDDTPWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEMM
TTDFAKGRELLFVPGRGGIGEDLDNQANTICDKMATKTNTKHRVLYVPEQLGEEAYRSLLKEPAIQEGLRLVQSANAIIL
GIGDALAMAKRRHTGEDVLEKIIRRKAVGEAFGYYFDEQGEVVHKVPTFGLQFEDLAQIPHIIAVAGGTSKAKAIKSYMK
SAPKNTILITDEGAAKSLLKGSNTLLK

Specific function: Unknown

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=270, Percent_Identity=26.2962962962963, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 38384; Mature: 38253

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGMLGMSERVLRGEVEFLKA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHH
QGLVEIASSGMTVTKEGLVVFRDLENVMNQLSGLHSMEEQLAKKLQIKKCLVVQGDSDDT
CCHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCC
PWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEMMTTDFAKGRELLFVPGRGGI
CHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCC
GEDLDNQANTICDKMATKTNTKHRVLYVPEQLGEEAYRSLLKEPAIQEGLRLVQSANAII
CCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCHHHHHHHHHHHHCCEEE
LGIGDALAMAKRRHTGEDVLEKIIRRKAVGEAFGYYFDEQGEVVHKVPTFGLQFEDLAQI
EECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHCC
PHIIAVAGGTSKAKAIKSYMKSAPKNTILITDEGAAKSLLKGSNTLLK
CCEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGMLGMSERVLRGEVEFLKA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHH
QGLVEIASSGMTVTKEGLVVFRDLENVMNQLSGLHSMEEQLAKKLQIKKCLVVQGDSDDT
CCHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCC
PWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEMMTTDFAKGRELLFVPGRGGI
CHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCC
GEDLDNQANTICDKMATKTNTKHRVLYVPEQLGEEAYRSLLKEPAIQEGLRLVQSANAII
CCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCHHHHHHHHHHHHCCEEE
LGIGDALAMAKRRHTGEDVLEKIIRRKAVGEAFGYYFDEQGEVVHKVPTFGLQFEDLAQI
EECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHCC
PHIIAVAGGTSKAKAIKSYMKSAPKNTILITDEGAAKSLLKGSNTLLK
CCEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1452037 [H]