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The map label for this gene is licT [H]

Identifier: 226224983

GI number: 226224983

Start: 2475750

End: 2476604

Strand: Reverse

Name: licT [H]

Synonym: Lm4b_02404

Alternate gene names: 226224983

Gene position: 2476604-2475750 (Counterclockwise)

Preceding gene: 226224985

Following gene: 226224981

Centisome position: 85.03

GC content: 35.67

Gene sequence:

>855_bases
ATGATTATCAAAAAAATACTGAATAACAATGTTGTAATCGCCGAGGGTAAAAGTGGCAAGGAGTCTGTAGTGATGGGTCG
TGGTCTTGCTTTTCAAAAGAAACTTGGAGATGAGGTGGAGGTATCCAAGATTGAAAAAACATTCGTAATGGAAACACATG
AACTTTCAGAAAAGCTCTCTGAGTTACTTAGTGAGATTCCACTGAAACATTTACGTGTTGCGGATGACGTGGTTCAGTAT
GCGCAAGAAACTTTGGAAACAGATTTAAGTGACAATATTTATTTGACCCTAACTGATCATATTAACTTCGCTGTGTCACG
GTATAATCAAGGTATTAATTTGAAAAACGCATTATTATGGGAAATAAAACGATTTTATCACGCAGAGTATTTGGTGGGAA
TGAAAGCACTAGATTTTATCGAGCAAGAAGTTGGAATTCGTTTAGATGAGGATGAAGCTGGTTTTATCGCGCTTCACATT
GTAAATGCTAGACAAGATGGGCAACAGATGCACATGACTGTAGCGATGACTCAAATTGTTCAAGATATTTTAAGTATTGT
TACGTATCATTATGGTATGGTATTGGATGAAACTTCACTGAATTACACGCGTTTTATTACACATTTACAGTATTTCGCGC
AACGTTTGCTTCGAAAAGAGATTGTCGATTCCGGCGATGACTTTTTATATGAACAAGTGCAAATTAAATATCCAGAAGCT
TTTAAATGTACGAAAAAAATTGATGCCTATTTAATAAATACGCATCATACAGAACTAACGAGAGACGAGCGTGTCTACCT
TACTATTCATATTTATCGTGTCACCGAACGAAATACAATTATAAAAGAAGAGTAA

Upstream 100 bases:

>100_bases
TGCTAAGGCGGGCAAAACCTGAATTAATTCAAGTGCTATTTTGATATTAATAGCATTGGAATTAGTTTGGGTTTTTTTCT
TTTGAAAGAGGTGAAAATGC

Downstream 100 bases:

>100_bases
AATTTTTTTGGACTTATATGTAATGGATTACAGAAAAGTACTGCTTAGCGCGGTGCTTTTTTATTGTAGTTTTTTTTCTA
CTAAAATGACAGAAAGTAAT

Product: transcription antiterminator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MIIKKILNNNVVIAEGKSGKESVVMGRGLAFQKKLGDEVEVSKIEKTFVMETHELSEKLSELLSEIPLKHLRVADDVVQY
AQETLETDLSDNIYLTLTDHINFAVSRYNQGINLKNALLWEIKRFYHAEYLVGMKALDFIEQEVGIRLDEDEAGFIALHI
VNARQDGQQMHMTVAMTQIVQDILSIVTYHYGMVLDETSLNYTRFITHLQYFAQRLLRKEIVDSGDDFLYEQVQIKYPEA
FKCTKKIDAYLINTHHTELTRDERVYLTIHIYRVTERNTIIKEE

Sequences:

>Translated_284_residues
MIIKKILNNNVVIAEGKSGKESVVMGRGLAFQKKLGDEVEVSKIEKTFVMETHELSEKLSELLSEIPLKHLRVADDVVQY
AQETLETDLSDNIYLTLTDHINFAVSRYNQGINLKNALLWEIKRFYHAEYLVGMKALDFIEQEVGIRLDEDEAGFIALHI
VNARQDGQQMHMTVAMTQIVQDILSIVTYHYGMVLDETSLNYTRFITHLQYFAQRLLRKEIVDSGDDFLYEQVQIKYPEA
FKCTKKIDAYLINTHHTELTRDERVYLTIHIYRVTERNTIIKEE
>Mature_284_residues
MIIKKILNNNVVIAEGKSGKESVVMGRGLAFQKKLGDEVEVSKIEKTFVMETHELSEKLSELLSEIPLKHLRVADDVVQY
AQETLETDLSDNIYLTLTDHINFAVSRYNQGINLKNALLWEIKRFYHAEYLVGMKALDFIEQEVGIRLDEDEAGFIALHI
VNARQDGQQMHMTVAMTQIVQDILSIVTYHYGMVLDETSLNYTRFITHLQYFAQRLLRKEIVDSGDDFLYEQVQIKYPEA
FKCTKKIDAYLINTHHTELTRDERVYLTIHIYRVTERNTIIKEE

Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=274, Percent_Identity=39.051094890511, Blast_Score=226, Evalue=2e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 33035; Mature: 33035

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIKKILNNNVVIAEGKSGKESVVMGRGLAFQKKLGDEVEVSKIEKTFVMETHELSEKLS
CCHHHHHCCCEEEEECCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ELLSEIPLKHLRVADDVVQYAQETLETDLSDNIYLTLTDHINFAVSRYNQGINLKNALLW
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHHH
EIKRFYHAEYLVGMKALDFIEQEVGIRLDEDEAGFIALHIVNARQDGQQMHMTVAMTQIV
HHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
QDILSIVTYHYGMVLDETSLNYTRFITHLQYFAQRLLRKEIVDSGDDFLYEQVQIKYPEA
HHHHHHHHHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEHEEECCCHH
FKCTKKIDAYLINTHHTELTRDERVYLTIHIYRVTERNTIIKEE
HHHHHHHCEEEEECCCCCCCCCCEEEEEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MIIKKILNNNVVIAEGKSGKESVVMGRGLAFQKKLGDEVEVSKIEKTFVMETHELSEKLS
CCHHHHHCCCEEEEECCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ELLSEIPLKHLRVADDVVQYAQETLETDLSDNIYLTLTDHINFAVSRYNQGINLKNALLW
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHHH
EIKRFYHAEYLVGMKALDFIEQEVGIRLDEDEAGFIALHIVNARQDGQQMHMTVAMTQIV
HHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
QDILSIVTYHYGMVLDETSLNYTRFITHLQYFAQRLLRKEIVDSGDDFLYEQVQIKYPEA
HHHHHHHHHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEHEEECCCHH
FKCTKKIDAYLINTHHTELTRDERVYLTIHIYRVTERNTIIKEE
HHHHHHHCEEEEECCCCCCCCCCEEEEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606172; 8969509; 9384377; 6087283 [H]