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The map label for this gene is yulB [H]

Identifier: 226224916

GI number: 226224916

Start: 2413698

End: 2414456

Strand: Reverse

Name: yulB [H]

Synonym: Lm4b_02336

Alternate gene names: 226224916

Gene position: 2414456-2413698 (Counterclockwise)

Preceding gene: 226224917

Following gene: 226224915

Centisome position: 82.89

GC content: 42.03

Gene sequence:

>759_bases
GTGCTATCTATCGAACGAAAACGCGCCATCGTCCAATATGTCAAAAGCCGAAAAATAGCAACTGTTAGCGAATTAGCTAA
ACATTTTGAAGTCCACGAAGCAACCATTCGCCGCGATTTAACCTCTTTAGAAAAAGACAAAAAGCTAAAAAGAACCCACG
GCGGAGTTATGATAGAAGAAAAAGTAGTTTCCGAACCAAATTGGAAAAAACGAAGCGAAGTGCGCTATGAAGAAAAACAA
CGCATCGCCACGTTAGCAGCGACAATGGTCAAAGACGGCGATACAATCATTCTTGACGCCGGAACAACAACCGGACACAT
CGCAACCGCATTAAAAGACCGATCCAAACTAACCGTCATAACAAACGATATCAACGTAGCTTCCATTATGCGCTTTTCCC
CGTCTAAAGTAATTGTGACAGGTGGCGTCATCTACCCAGAAACTTTCATCCTTAACGGTATGATTACAAGCGGAACCTTG
CAGAGCATTCACGTACATAAAGCATTTGTAACCACGCCAGCGCTCGATATCGACAAAGGCCTAATGCATTACGACGAATA
CCTAATCCCAGCTAAGCAACAAATGCTCCACTCAGCCGATGAAGTCATCTTAGTAACAGACCACACCAAGTTCGGCCGCA
TTTCACTATACAAATACGCAGCCCTAGACGAAATCTCTTCTATTATCACTGGAAAAGAAATAGACCCAGTATTAAAAGAA
CAATTTGAAGAAAAAGGAATGCAAATTTATACAACATAA

Upstream 100 bases:

>100_bases
CACTTCCAAACCTTGGGGCCAATTGCTCCAAGGTTTTTTGTTTGTTTGCGATTTTCTTCCATTGGAGTTACCATATAGTT
AAACAAAAGGAGGGGAAGAA

Downstream 100 bases:

>100_bases
TGTTTTAAAAACTCCATTTAATCACCAATTTATGCACCAAATTCATCTTTTTTCATCTTTATTTAAAAAACTTTGTAAAA
AGTATTGACGAAAGGCAAAA

Product: transcription regulator DeoR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MLSIERKRAIVQYVKSRKIATVSELAKHFEVHEATIRRDLTSLEKDKKLKRTHGGVMIEEKVVSEPNWKKRSEVRYEEKQ
RIATLAATMVKDGDTIILDAGTTTGHIATALKDRSKLTVITNDINVASIMRFSPSKVIVTGGVIYPETFILNGMITSGTL
QSIHVHKAFVTTPALDIDKGLMHYDEYLIPAKQQMLHSADEVILVTDHTKFGRISLYKYAALDEISSIITGKEIDPVLKE
QFEEKGMQIYTT

Sequences:

>Translated_252_residues
MLSIERKRAIVQYVKSRKIATVSELAKHFEVHEATIRRDLTSLEKDKKLKRTHGGVMIEEKVVSEPNWKKRSEVRYEEKQ
RIATLAATMVKDGDTIILDAGTTTGHIATALKDRSKLTVITNDINVASIMRFSPSKVIVTGGVIYPETFILNGMITSGTL
QSIHVHKAFVTTPALDIDKGLMHYDEYLIPAKQQMLHSADEVILVTDHTKFGRISLYKYAALDEISSIITGKEIDPVLKE
QFEEKGMQIYTT
>Mature_252_residues
MLSIERKRAIVQYVKSRKIATVSELAKHFEVHEATIRRDLTSLEKDKKLKRTHGGVMIEEKVVSEPNWKKRSEVRYEEKQ
RIATLAATMVKDGDTIILDAGTTTGHIATALKDRSKLTVITNDINVASIMRFSPSKVIVTGGVIYPETFILNGMITSGTL
QSIHVHKAFVTTPALDIDKGLMHYDEYLIPAKQQMLHSADEVILVTDHTKFGRISLYKYAALDEISSIITGKEIDPVLKE
QFEEKGMQIYTT

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=250, Percent_Identity=30.4, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1788069, Length=233, Percent_Identity=36.0515021459227, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1789829, Length=234, Percent_Identity=30.7692307692308, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI226510968, Length=231, Percent_Identity=31.6017316017316, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1789519, Length=248, Percent_Identity=28.2258064516129, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1790753, Length=249, Percent_Identity=26.1044176706827, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787540, Length=230, Percent_Identity=29.1304347826087, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI87082344, Length=245, Percent_Identity=26.530612244898, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790635, Length=254, Percent_Identity=24.4094488188976, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787063, Length=211, Percent_Identity=27.0142180094787, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789170, Length=233, Percent_Identity=26.1802575107296, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28373; Mature: 28373

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSIERKRAIVQYVKSRKIATVSELAKHFEVHEATIRRDLTSLEKDKKLKRTHGGVMIEE
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEH
KVVSEPNWKKRSEVRYEEKQRIATLAATMVKDGDTIILDAGTTTGHIATALKDRSKLTVI
HHCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCEEEEE
TNDINVASIMRFSPSKVIVTGGVIYPETFILNGMITSGTLQSIHVHKAFVTTPALDIDKG
ECCCCEEHHEEECCCEEEEECCEECCCCEEECCEECCCCHHHEEEEHHEEECCCCCHHHH
LMHYDEYLIPAKQQMLHSADEVILVTDHTKFGRISLYKYAALDEISSIITGKEIDPVLKE
HHHHHHHCCCHHHHHHCCCCCEEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCCCHHHHH
QFEEKGMQIYTT
HHHHCCCEEEEC
>Mature Secondary Structure
MLSIERKRAIVQYVKSRKIATVSELAKHFEVHEATIRRDLTSLEKDKKLKRTHGGVMIEE
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEH
KVVSEPNWKKRSEVRYEEKQRIATLAATMVKDGDTIILDAGTTTGHIATALKDRSKLTVI
HHCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCEEEEE
TNDINVASIMRFSPSKVIVTGGVIYPETFILNGMITSGTLQSIHVHKAFVTTPALDIDKG
ECCCCEEHHEEECCCEEEEECCEECCCCEEECCEECCCCHHHEEEEHHEEECCCCCHHHH
LMHYDEYLIPAKQQMLHSADEVILVTDHTKFGRISLYKYAALDEISSIITGKEIDPVLKE
HHHHHHHCCCHHHHHHCCCCCEEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCCCHHHHH
QFEEKGMQIYTT
HHHHCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]