BacMap

Definition	Listeria monocytogenes Clip81459, complete genome.
Accession	NC_012488
Length	2,912,690

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The map label for this gene is abcX [H]

Identifier: 226224381

GI number: 226224381

Start: 1841186

End: 1841959

Strand: Direct

Name: abcX [H]

Synonym: Lm4b_01794

Alternate gene names: 226224381

Gene position: 1841186-1841959 (Clockwise)

Preceding gene: 226224364

Following gene: 226224382

Centisome position: 63.21

GC content: 38.24

Gene sequence:

>774_bases
ATGTTTGCTTTTGAGAATGTTTGTTTAAAGCGTGATAATAAAATGATTTTATCGGATATTAATTGGGTGGTTAATGATAA
GGAAAACTGGGCAATACTCGGACTAAACGGTTCTGGAAAAACAACTTTGTTGCAACTTTTAAATGGGTATCTTTGGCCTA
GCAGTGGAAATCTTCAAGTACTTGGGCATGTTTTTGGACAGACCTCTTTGCCAGAGTTACGTAAATCGATTGGTTGGGTT
AGTAATGCGCTTGATCATCAGCTGAAAGAGTATGAGTTCAGCGAGCAAATTGTACTTAGTGGGAAATTTGCAAGTATTGG
CATTTATGAGAAAGTCACTACTGCGGAGATTGACCAAGCGAAAAAGCTGCTTACCGATTGTGGCGGTAGCACACTTATTG
GAAAGCCGTATAAAATTTTATCGCAAGGAGAGCGTCAAATTGTTTTAATTGCACGTGCTTTAATGGCAAGTCCTAAGTTA
CTTATTTTAGATGAACCTTGTAATGGGCTTGATCTATTTGCAAAGGAGCGCTTATTAGAAAGAATTAAGAAGATTGCGGA
ACTGCCAGAATCCCCAACGATGCTTTTTGTTACTCACCATACGGAAGAAATTCTTCCCTGCTTCGATAATATCATTTTAC
TGCGTGACGGGGAAATAACTCATCACGGAAAAACAGAAAATCTTTTGACAGAGGAAGTTCTTCAAGATTTTTATCAAAAG
CCAGTAGAATTAATTCGGATAAAAGACGGCTCCATTGCAGTCTATCCGAAGTAA

Upstream 100 bases:

>100_bases
TGCGCTGCAATTATTATTTCTTCTTGCTTCATCATTAGTATTGGCTCCTTTTTTACGTTATTTTCATGTACAATAGTAGA
AAATGGAAATGGGGTATTCG

Downstream 100 bases:

>100_bases
ATGGTATAGTTAGAATACGAAAAATGCGTATGTAGAGGGGCGAAATGTTTTGTATGAAACGATGATTGCAAAAGCAGGTG
TACGTGAGCTTCTCGGGATG

Product: ABC transporter (ATP-binding protein)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MFAFENVCLKRDNKMILSDINWVVNDKENWAILGLNGSGKTTLLQLLNGYLWPSSGNLQVLGHVFGQTSLPELRKSIGWV
SNALDHQLKEYEFSEQIVLSGKFASIGIYEKVTTAEIDQAKKLLTDCGGSTLIGKPYKILSQGERQIVLIARALMASPKL
LILDEPCNGLDLFAKERLLERIKKIAELPESPTMLFVTHHTEEILPCFDNIILLRDGEITHHGKTENLLTEEVLQDFYQK
PVELIRIKDGSIAVYPK

Sequences:

>Translated_257_residues
MFAFENVCLKRDNKMILSDINWVVNDKENWAILGLNGSGKTTLLQLLNGYLWPSSGNLQVLGHVFGQTSLPELRKSIGWV
SNALDHQLKEYEFSEQIVLSGKFASIGIYEKVTTAEIDQAKKLLTDCGGSTLIGKPYKILSQGERQIVLIARALMASPKL
LILDEPCNGLDLFAKERLLERIKKIAELPESPTMLFVTHHTEEILPCFDNIILLRDGEITHHGKTENLLTEEVLQDFYQK
PVELIRIKDGSIAVYPK
>Mature_257_residues
MFAFENVCLKRDNKMILSDINWVVNDKENWAILGLNGSGKTTLLQLLNGYLWPSSGNLQVLGHVFGQTSLPELRKSIGWV
SNALDHQLKEYEFSEQIVLSGKFASIGIYEKVTTAEIDQAKKLLTDCGGSTLIGKPYKILSQGERQIVLIARALMASPKL
LILDEPCNGLDLFAKERLLERIKKIAELPESPTMLFVTHHTEEILPCFDNIILLRDGEITHHGKTENLLTEEVLQDFYQK
PVELIRIKDGSIAVYPK

Specific function: Involved In The Transport Of Molybdenum Into The Cell. Involved In Photorepair. Could Act On Uv-Induced DNA Damage Other Than Pyrimidine Dimers. [C]

COG id: COG1119

COG function: function code P; ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42490749, Length=240, Percent_Identity=28.75, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI9955963, Length=248, Percent_Identity=28.2258064516129, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI171184400, Length=234, Percent_Identity=30.7692307692308, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI255708477, Length=245, Percent_Identity=28.9795918367347, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI31657092, Length=207, Percent_Identity=28.0193236714976, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI4505771, Length=233, Percent_Identity=26.6094420600858, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI9961250, Length=233, Percent_Identity=26.6094420600858, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI9961252, Length=233, Percent_Identity=26.6094420600858, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI47078218, Length=217, Percent_Identity=27.1889400921659, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI45446740, Length=217, Percent_Identity=27.1889400921659, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI116734710, Length=216, Percent_Identity=27.3148148148148, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI42741659, Length=219, Percent_Identity=26.027397260274, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI9665248, Length=236, Percent_Identity=26.6949152542373, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI153792144, Length=196, Percent_Identity=27.5510204081633, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI21536378, Length=224, Percent_Identity=25, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI156105685, Length=234, Percent_Identity=26.4957264957265, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI150417984, Length=189, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI27881501, Length=205, Percent_Identity=27.8048780487805, Blast_Score=65, Evalue=9e-11,
Organism=Homo sapiens, GI30795238, Length=205, Percent_Identity=27.8048780487805, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI1786975, Length=208, Percent_Identity=33.6538461538462, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787792, Length=226, Percent_Identity=29.2035398230088, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786654, Length=229, Percent_Identity=26.6375545851528, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1788450, Length=242, Percent_Identity=26.0330578512397, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787112, Length=230, Percent_Identity=30.8695652173913, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786253, Length=227, Percent_Identity=27.3127753303965, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87081791, Length=229, Percent_Identity=27.0742358078603, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787089, Length=218, Percent_Identity=30.2752293577982, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787712, Length=216, Percent_Identity=31.0185185185185, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788225, Length=240, Percent_Identity=29.5833333333333, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787143, Length=236, Percent_Identity=27.5423728813559, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1790467, Length=225, Percent_Identity=30.6666666666667, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787370, Length=221, Percent_Identity=27.6018099547511, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788897, Length=226, Percent_Identity=26.9911504424779, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786563, Length=217, Percent_Identity=29.4930875576037, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786319, Length=215, Percent_Identity=26.9767441860465, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1786345, Length=253, Percent_Identity=22.5296442687747, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789032, Length=218, Percent_Identity=25.6880733944954, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87081834, Length=210, Percent_Identity=29.5238095238095, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787029, Length=245, Percent_Identity=28.1632653061224, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788210, Length=206, Percent_Identity=30.0970873786408, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789593, Length=238, Percent_Identity=26.890756302521, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081709, Length=238, Percent_Identity=25.2100840336134, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790162, Length=228, Percent_Identity=28.0701754385965, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788761, Length=209, Percent_Identity=28.2296650717703, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI48995001, Length=202, Percent_Identity=26.2376237623762, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787113, Length=221, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI87081782, Length=211, Percent_Identity=26.0663507109005, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI48994943, Length=207, Percent_Identity=29.951690821256, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787041, Length=195, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786803, Length=234, Percent_Identity=23.5042735042735, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790525, Length=244, Percent_Identity=25, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786872, Length=247, Percent_Identity=26.7206477732794, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789891, Length=228, Percent_Identity=25.8771929824561, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1786398, Length=240, Percent_Identity=23.75, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786981, Length=215, Percent_Identity=29.3023255813954, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790190, Length=221, Percent_Identity=25.7918552036199, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789991, Length=222, Percent_Identity=28.3783783783784, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1787105, Length=211, Percent_Identity=26.0663507109005, Blast_Score=60, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI25146777, Length=234, Percent_Identity=31.6239316239316, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI212646699, Length=228, Percent_Identity=28.0701754385965, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI193211017, Length=245, Percent_Identity=28.1632653061224, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193211015, Length=245, Percent_Identity=28.1632653061224, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71996809, Length=245, Percent_Identity=28.1632653061224, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193202349, Length=234, Percent_Identity=27.3504273504274, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17569145, Length=243, Percent_Identity=29.6296296296296, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71996550, Length=233, Percent_Identity=29.6137339055794, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=216, Percent_Identity=25, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=226, Percent_Identity=29.646017699115, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI115535101, Length=255, Percent_Identity=27.4509803921569, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=233, Percent_Identity=26.6094420600858, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=251, Percent_Identity=27.8884462151394, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=235, Percent_Identity=26.8085106382979, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=220, Percent_Identity=27.7272727272727, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71992285, Length=222, Percent_Identity=27.4774774774775, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=229, Percent_Identity=24.4541484716157, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=232, Percent_Identity=28.8793103448276, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI115534520, Length=235, Percent_Identity=25.9574468085106, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323959, Length=231, Percent_Identity=29.8701298701299, Blast_Score=79, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6324985, Length=229, Percent_Identity=24.4541484716157, Blast_Score=69, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6322980, Length=236, Percent_Identity=23.728813559322, Blast_Score=69, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6324498, Length=238, Percent_Identity=26.890756302521, Blast_Score=69, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6320339, Length=222, Percent_Identity=28.8288288288288, Blast_Score=62, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=259, Percent_Identity=25.0965250965251, Blast_Score=62, Evalue=1e-10,
Organism=Drosophila melanogaster, GI24653245, Length=233, Percent_Identity=29.6137339055794, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI281363262, Length=233, Percent_Identity=29.6137339055794, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24641565, Length=239, Percent_Identity=26.7782426778243, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21357907, Length=248, Percent_Identity=28.2258064516129, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI116007184, Length=227, Percent_Identity=27.3127753303965, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI221500365, Length=227, Percent_Identity=27.3127753303965, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24659289, Length=224, Percent_Identity=25.8928571428571, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17136662, Length=224, Percent_Identity=26.7857142857143, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI23397593, Length=234, Percent_Identity=29.4871794871795, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI85726357, Length=234, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28574744, Length=242, Percent_Identity=26.4462809917355, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI45552199, Length=234, Percent_Identity=29.4871794871795, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24581407, Length=234, Percent_Identity=29.4871794871795, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI45550390, Length=216, Percent_Identity=28.7037037037037, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI19920532, Length=240, Percent_Identity=26.25, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24580930, Length=240, Percent_Identity=26.25, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24650853, Length=223, Percent_Identity=27.3542600896861, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24650855, Length=223, Percent_Identity=27.3542600896861, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 28933; Mature: 28933

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAFENVCLKRDNKMILSDINWVVNDKENWAILGLNGSGKTTLLQLLNGYLWPSSGNLQV
CCCCCCHHHHCCCEEEEEECCEEEECCCCEEEEEECCCCHHHHHHHHHCEECCCCCCEEE
LGHVFGQTSLPELRKSIGWVSNALDHQLKEYEFSEQIVLSGKFASIGIYEKVTTAEIDQA
EEEHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEHHHHHHHHHHHHH
KKLLTDCGGSTLIGKPYKILSQGERQIVLIARALMASPKLLILDEPCNGLDLFAKERLLE
HHHHHHCCCCCCCCCCHHHHCCCCCEEHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
RIKKIAELPESPTMLFVTHHTEEILPCFDNIILLRDGEITHHGKTENLLTEEVLQDFYQK
HHHHHHHCCCCCCEEEEECCCHHHHHHHCCEEEEECCCEEECCCCHHHHHHHHHHHHHHC
PVELIRIKDGSIAVYPK
CEEEEEECCCCEEEECC
>Mature Secondary Structure
MFAFENVCLKRDNKMILSDINWVVNDKENWAILGLNGSGKTTLLQLLNGYLWPSSGNLQV
CCCCCCHHHHCCCEEEEEECCEEEECCCCEEEEEECCCCHHHHHHHHHCEECCCCCCEEE
LGHVFGQTSLPELRKSIGWVSNALDHQLKEYEFSEQIVLSGKFASIGIYEKVTTAEIDQA
EEEHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEHHHHHHHHHHHHH
KKLLTDCGGSTLIGKPYKILSQGERQIVLIARALMASPKLLILDEPCNGLDLFAKERLLE
HHHHHHCCCCCCCCCCHHHHCCCCCEEHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
RIKKIAELPESPTMLFVTHHTEEILPCFDNIILLRDGEITHHGKTENLLTEEVLQDFYQK
HHHHHHHCCCCCCEEEEECCCHHHHHHHCCEEEEECCCEEECCCCHHHHHHHHHHHHHHC
PVELIRIKDGSIAVYPK
CEEEEEECCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11029425; 12397186 [H]