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The map label for this gene is yfkH [H]

Identifier: 226224309

GI number: 226224309

Start: 1754924

End: 1755793

Strand: Reverse

Name: yfkH [H]

Synonym: Lm4b_01720

Alternate gene names: 226224309

Gene position: 1755793-1754924 (Counterclockwise)

Preceding gene: 226224311

Following gene: 226224307

Centisome position: 60.28

GC content: 37.59

Gene sequence:

>870_bases
GTGTGGAAAAAAGTAGTTAAATATACAAAGAAAAACGGGATTGTTCAAATTGGCCAAACAGTAAGTGCGAGAGTAGGTCG
AAATGATGTTTCAGGAAATGCAGCACAGTTAGCTTATTATATGCTGTTTTCGATTTTTCCAATGCTCTTAATCGCGGCAA
CATTACTTGCCTATCTTCATATTGATAAAGATTCCGTTTTTAATATGATTAAAGAATTCGCGCCAGACCAGATTATGGAC
TTTTTAGAAGAAAATTTAAATAACTTACTAACGCAGAAAAATGGCGGATTACTTTCTATCGGGATTATCGCGACTTTATG
GTCGGCCTCGAATGGCATGAATGCGGTCATGAAATCGCTCAATAAAGCGTATGGCGTAACCAATAAGCGAAACTACGTCG
TGCAACGATTATTATCGATGTTTTTCACACTCGCAATGCTTGCGACAGTAGGGGCAACCTTGCTATTACTTGTATTTGGA
CAACAAATAGGGATGTTTTTAATTAATCATTTGAATTTCTCCGAAGACTTTCTTAGCTTTTGGAATAATCTTCGTTGGAC
CGTTACACTCATCGTTATTTTTGTCGTATTTACCTTTTTATATTGGGTCGCACCAAACCGGCGCAGTACGTTGATTAGTG
TTCTACCTGGAGCGCTTTTTTCAACAATCGGTTGGACAGTTGCTTCGCTAGGTTTTGCGTATTACGTAAATAATTTCGGC
AACTATTCAGCAACATATGGCAGTATCGGTGTAATTATTATTTTAATGTTATGGTTTTATTTGACCGGCATTATTTTGAT
GATTGGCGGGGAGCTTAACGCTACACTGGCGATTCGGAAAAAGAAAAAAGAATTAGGCGAAATCAATTAA

Upstream 100 bases:

>100_bases
TCAAGATTCATCTTTTTGCTCCTTTCAAGCTAATAGACAAAATTTTACCATAGTAGAAGAAAAACTTCCAGACGAATGAC
TAGAACAGGGGGCCTTATCA

Downstream 100 bases:

>100_bases
AAAAACGCTAAAACAGCAAAAAGCCTGTTTTAGCGTTTTAATTTTTCATGAATAAGTTGCATGACATAATCTGCGTCATT
TGGTTGATTAATATCTATTT

Product: transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MWKKVVKYTKKNGIVQIGQTVSARVGRNDVSGNAAQLAYYMLFSIFPMLLIAATLLAYLHIDKDSVFNMIKEFAPDQIMD
FLEENLNNLLTQKNGGLLSIGIIATLWSASNGMNAVMKSLNKAYGVTNKRNYVVQRLLSMFFTLAMLATVGATLLLLVFG
QQIGMFLINHLNFSEDFLSFWNNLRWTVTLIVIFVVFTFLYWVAPNRRSTLISVLPGALFSTIGWTVASLGFAYYVNNFG
NYSATYGSIGVIIILMLWFYLTGIILMIGGELNATLAIRKKKKELGEIN

Sequences:

>Translated_289_residues
MWKKVVKYTKKNGIVQIGQTVSARVGRNDVSGNAAQLAYYMLFSIFPMLLIAATLLAYLHIDKDSVFNMIKEFAPDQIMD
FLEENLNNLLTQKNGGLLSIGIIATLWSASNGMNAVMKSLNKAYGVTNKRNYVVQRLLSMFFTLAMLATVGATLLLLVFG
QQIGMFLINHLNFSEDFLSFWNNLRWTVTLIVIFVVFTFLYWVAPNRRSTLISVLPGALFSTIGWTVASLGFAYYVNNFG
NYSATYGSIGVIIILMLWFYLTGIILMIGGELNATLAIRKKKKELGEIN
>Mature_289_residues
MWKKVVKYTKKNGIVQIGQTVSARVGRNDVSGNAAQLAYYMLFSIFPMLLIAATLLAYLHIDKDSVFNMIKEFAPDQIMD
FLEENLNNLLTQKNGGLLSIGIIATLWSASNGMNAVMKSLNKAYGVTNKRNYVVQRLLSMFFTLAMLATVGATLLLLVFG
QQIGMFLINHLNFSEDFLSFWNNLRWTVTLIVIFVVFTFLYWVAPNRRSTLISVLPGALFSTIGWTVASLGFAYYVNNFG
NYSATYGSIGVIIILMLWFYLTGIILMIGGELNATLAIRKKKKELGEIN

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790319, Length=275, Percent_Identity=24.7272727272727, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 32385; Mature: 32385

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]