Click here to switch to the map view.

The map label for this gene is yebC [C]

Identifier: 226224136

GI number: 226224136

Start: 1553853

End: 1554578

Strand: Reverse

Name: yebC [C]

Synonym: Lm4b_01545

Alternate gene names: 226224136

Gene position: 1554578-1553853 (Counterclockwise)

Preceding gene: 226224137

Following gene: 226224135

Centisome position: 53.37

GC content: 38.57

Gene sequence:

>726_bases
ATGTCAGGACATTCAAAATGGAATAATATTCAAGGTAGAAAAAATGCACAAGATTCTAAGCGTTCCAAAGTATTCCAAAA
ATTAGCGAGAGAAATTTTTGTTGCAGCGAAAAAAGGTCCTGATCCGAATTTAAACCCGTCACTCCGATTAGTTATGGATA
AAGCAAAAGCGGTCAACATGCCGAACGATAATATTAAGCGAGCTATTGATAAAGCTGCTGGTAATACGAGTGGCGAAAAT
TATGATGAAGTAACCTATGAAGGATATGCGCCGGGAGGAATTGCGGTTCTTGTCCATGCGCTTACAGATAATAAAAATCG
TACGAGCACCAATGTTCGTGTAGCTTTTAATAAAAACGGTGGAAGTCTTGGTGAAACCGGTAGTGTGAGCTATATGTTTG
ATCGTAAAGGTTATCTTGTTATTTTACGCGAAGGTTTAGATGTGGACGAAGAGGAATTCATGCTGGAGGCTATTGAAGCA
GGGGCAGATGATGTGGAAGTAAGCGAAGATGTATTTGAAATTTTTACTGATCCGGCTACTTTTCCGGAAGTGAAAGAGGC
TTTGCAAGAAGCCGGGTACACTTTTGCTACTGCTGAATTATCCATGTTTCCAACGGTTTATAATGAAGTTGCAGAAAATA
ATCAAACACAATTTGATAAAATGTTAGAAGCACTTGAAGATGATGATGACGTGCAAGAAGTTTATACGAACGCAGAGATA
AATTAA

Upstream 100 bases:

>100_bases
ATCGCAATTTTTTGCGGTAACTTTTTTATTGCGATTCCTCCCTTTTTACGTTAGAATTTGTAGGAGAAAAGCTTTACTAA
ATCTAAAAGGAGTGAAATAT

Downstream 100 bases:

>100_bases
GTCAACACACCCCTTTTTCGGACAATTTGAATAGGGGTGTTTTATATGAATCACTAGGAGGAAGAAAATATGAAACCGCG
TAAAGTAATGATAATTGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGPDPNLNPSLRLVMDKAKAVNMPNDNIKRAIDKAAGNTSGEN
YDEVTYEGYAPGGIAVLVHALTDNKNRTSTNVRVAFNKNGGSLGETGSVSYMFDRKGYLVILREGLDVDEEEFMLEAIEA
GADDVEVSEDVFEIFTDPATFPEVKEALQEAGYTFATAELSMFPTVYNEVAENNQTQFDKMLEALEDDDDVQEVYTNAEI
N

Sequences:

>Translated_241_residues
MSGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGPDPNLNPSLRLVMDKAKAVNMPNDNIKRAIDKAAGNTSGEN
YDEVTYEGYAPGGIAVLVHALTDNKNRTSTNVRVAFNKNGGSLGETGSVSYMFDRKGYLVILREGLDVDEEEFMLEAIEA
GADDVEVSEDVFEIFTDPATFPEVKEALQEAGYTFATAELSMFPTVYNEVAENNQTQFDKMLEALEDDDDVQEVYTNAEI
N
>Mature_240_residues
SGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGPDPNLNPSLRLVMDKAKAVNMPNDNIKRAIDKAAGNTSGENY
DEVTYEGYAPGGIAVLVHALTDNKNRTSTNVRVAFNKNGGSLGETGSVSYMFDRKGYLVILREGLDVDEEEFMLEAIEAG
ADDVEVSEDVFEIFTDPATFPEVKEALQEAGYTFATAELSMFPTVYNEVAENNQTQFDKMLEALEDDDDVQEVYTNAEIN

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family [H]

Homologues:

Organism=Homo sapiens, GI27545315, Length=247, Percent_Identity=31.9838056680162, Blast_Score=131, Evalue=6e-31,
Organism=Escherichia coli, GI1788171, Length=243, Percent_Identity=43.6213991769547, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1788294, Length=235, Percent_Identity=44.2553191489362, Blast_Score=173, Evalue=8e-45,
Organism=Caenorhabditis elegans, GI17556100, Length=245, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6321458, Length=265, Percent_Identity=32.8301886792453, Blast_Score=116, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24583305, Length=252, Percent_Identity=27.3809523809524, Blast_Score=85, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002876
- InterPro:   IPR017856 [H]

Pfam domain/function: PF01709 DUF28 [H]

EC number: NA

Molecular weight: Translated: 26696; Mature: 26565

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGPDPNLNPSLRLVMDKAKAVNM
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHCCC
PNDNIKRAIDKAAGNTSGENYDEVTYEGYAPGGIAVLVHALTDNKNRTSTNVRVAFNKNG
CCHHHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHEEEHHHCCCCCCCCEEEEEEECCC
GSLGETGSVSYMFDRKGYLVILREGLDVDEEEFMLEAIEAGADDVEVSEDVFEIFTDPAT
CCCCCCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
FPEVKEALQEAGYTFATAELSMFPTVYNEVAENNQTQFDKMLEALEDDDDVQEVYTNAEI
CHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCC
N
C
>Mature Secondary Structure 
SGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGPDPNLNPSLRLVMDKAKAVNM
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHCCC
PNDNIKRAIDKAAGNTSGENYDEVTYEGYAPGGIAVLVHALTDNKNRTSTNVRVAFNKNG
CCHHHHHHHHHHCCCCCCCCCCCCEECCCCCCHHHHEEEHHHCCCCCCCCEEEEEEECCC
GSLGETGSVSYMFDRKGYLVILREGLDVDEEEFMLEAIEAGADDVEVSEDVFEIFTDPAT
CCCCCCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
FPEVKEALQEAGYTFATAELSMFPTVYNEVAENNQTQFDKMLEALEDDDDVQEVYTNAEI
CHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]