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The map label for this gene is yrvN [H]

Identifier: 226224115

GI number: 226224115

Start: 1530300

End: 1531583

Strand: Reverse

Name: yrvN [H]

Synonym: Lm4b_01524

Alternate gene names: 226224115

Gene position: 1531583-1530300 (Counterclockwise)

Preceding gene: 226224120

Following gene: 226224114

Centisome position: 52.58

GC content: 41.28

Gene sequence:

>1284_bases
ATGGCAATTCAACCTTTAGCTTACCGGATGCGCCCGAAAGCACTAGATGAAATCGTGGGACAAACGCATTTAGTCGGTAA
AGATAAAATTATTTATCGGATGGTCAAAGCAAAACAATTATCTTCTATGATATTATACGGGCCGCCCGGAATTGGAAAAA
CCTCGATTGCAAGTGCGATTGCTGGAAGTACAAAATATGCATTCCGTACATTAAATGCAGTTACCAATAATAAAAAAGAT
ATGGAAGTTGTAGCAGCCGAGGCGAAAATGAGCGGCACGGTTATTCTTCTTTTAGATGAAGTACATCGGTTGGATAAAGC
GAAACAAGATTTTTTATTACCATTACTTGAAAGTGGCGCGATTATCTTAATAGGTGCAACGACAAGTAATCCTTATATCG
CGATTAATCCGGCTATTCGAAGCCGAACGCAAATTTTCGAGTTAAAACCTCTAACGGTAGAAGATATTATGATAACAATG
GACCGGGCGCTTTCAGATAAAGAACGCGGGCTTGGGAATTATGATGTAGAAATAGATGAGGTTGCGAAAAAACATTTTGC
AACGGCGAGTAACGGCGATGTGCGAAGTGCGCTGAATGCCTTAGAGTTAGCTGTCATTTCTTCTGAACCAAATGAGGATG
GTGTGATTCATATTACGCTCGATGTGGCAGAGGAGTGTTTACAAAAGAAAAGTTTAGCCCATGACAAAGACGGCGATGCC
CATTATGATGTATTAAGTGCTTTTCAAAAATCGGTTCGTGGTAGCGATGTGAATGCGGCACTCCATTATATGGGACGTTT
AATTGAGGCGGGAGATTTAGTCAGTATTAGCCGGAGAATGCTCGTTATGGCATATGAGGATATTGGTCTTGCGAGTCCAC
AGGCCGGGGCGCATACACTCGCAGCCATTCAAACCGCAGAAAAAGTCGGGTTTCCTGAAGCGAGAATTCCGCTCGCCAAT
GCTGTCATCGAGCTTTGCCTTTCGCCTAAATCCAATTCTGCTATTATGGCGATTGATGCGGCACTAGCAGATATTCGCCA
AGGAAAAAGTGGAGAAGTGCCAGATCATTTGCGAGATGGACATCATTCTGGTGCAGAAAAACTTGGACGAGCGATTGATT
ATAAATATCCACATAATTATGATAACGCTTGGGTGGATCAACAATATTTACCAGATCGTCTTAAAAACAAATTGTATTAT
GCGCCGAAATTCACTTCTAAATTTGAGCAGACAATTGCTGGTGTGTATCAAAAAATTAACGAAAATAAAGCAAAAAAAGA
ATAA

Upstream 100 bases:

>100_bases
ATATCGGAATTACAGAAAGAAGGCAAAGGAAACAAGTGGGTGAACGCACAGATGTTCTTATGTTATAATAGTAAACAAGC
AAATAAGAAGGAGCGGTTAT

Downstream 100 bases:

>100_bases
AAAAAGTGCCAAATGAAAAGTCGCTAACATTGAAATTTCGTCTTTTCTATGGTATTCTAAATGAAGAAAAGAAACCCTAA
TGTATTCGATATAGTTCCTA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MAIQPLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQLSSMILYGPPGIGKTSIASAIAGSTKYAFRTLNAVTNNKKD
MEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAIILIGATTSNPYIAINPAIRSRTQIFELKPLTVEDIMITM
DRALSDKERGLGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKKSLAHDKDGDA
HYDVLSAFQKSVRGSDVNAALHYMGRLIEAGDLVSISRRMLVMAYEDIGLASPQAGAHTLAAIQTAEKVGFPEARIPLAN
AVIELCLSPKSNSAIMAIDAALADIRQGKSGEVPDHLRDGHHSGAEKLGRAIDYKYPHNYDNAWVDQQYLPDRLKNKLYY
APKFTSKFEQTIAGVYQKINENKAKKE

Sequences:

>Translated_427_residues
MAIQPLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQLSSMILYGPPGIGKTSIASAIAGSTKYAFRTLNAVTNNKKD
MEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAIILIGATTSNPYIAINPAIRSRTQIFELKPLTVEDIMITM
DRALSDKERGLGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKKSLAHDKDGDA
HYDVLSAFQKSVRGSDVNAALHYMGRLIEAGDLVSISRRMLVMAYEDIGLASPQAGAHTLAAIQTAEKVGFPEARIPLAN
AVIELCLSPKSNSAIMAIDAALADIRQGKSGEVPDHLRDGHHSGAEKLGRAIDYKYPHNYDNAWVDQQYLPDRLKNKLYY
APKFTSKFEQTIAGVYQKINENKAKKE
>Mature_426_residues
AIQPLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQLSSMILYGPPGIGKTSIASAIAGSTKYAFRTLNAVTNNKKDM
EVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAIILIGATTSNPYIAINPAIRSRTQIFELKPLTVEDIMITMD
RALSDKERGLGNYDVEIDEVAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKKSLAHDKDGDAH
YDVLSAFQKSVRGSDVNAALHYMGRLIEAGDLVSISRRMLVMAYEDIGLASPQAGAHTLAAIQTAEKVGFPEARIPLANA
VIELCLSPKSNSAIMAIDAALADIRQGKSGEVPDHLRDGHHSGAEKLGRAIDYKYPHNYDNAWVDQQYLPDRLKNKLYYA
PKFTSKFEQTIAGVYQKINENKAKKE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=437, Percent_Identity=35.2402745995423, Blast_Score=239, Evalue=3e-63,
Organism=Homo sapiens, GI18426904, Length=437, Percent_Identity=32.0366132723112, Blast_Score=198, Evalue=9e-51,
Organism=Escherichia coli, GI1787119, Length=406, Percent_Identity=38.1773399014778, Blast_Score=276, Evalue=2e-75,
Organism=Saccharomyces cerevisiae, GI6324111, Length=419, Percent_Identity=33.1742243436754, Blast_Score=225, Evalue=9e-60,
Organism=Saccharomyces cerevisiae, GI6324039, Length=265, Percent_Identity=27.5471698113208, Blast_Score=77, Evalue=4e-15,
Organism=Drosophila melanogaster, GI19921076, Length=225, Percent_Identity=25.3333333333333, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 46781; Mature: 46650

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQPLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQLSSMILYGPPGIGKTSIASAI
CCCCCHHHHCCHHHHHHHHCCCEECCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH
AGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGA
HCCHHHHHHHHHHHHCCCCCHHHEEEHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCC
IILIGATTSNPYIAINPAIRSRTQIFELKPLTVEDIMITMDRALSDKERGLGNYDVEIDE
EEEEEECCCCCEEEECCCHHCCCEEEEECCCCHHHHHHHHHHHHCHHHCCCCCCCCCHHH
VAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKKSLAHDKDGDA
HHHHHHCCCCCCHHHHHHHHHHEEEEECCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCH
HYDVLSAFQKSVRGSDVNAALHYMGRLIEAGDLVSISRRMLVMAYEDIGLASPQAGAHTL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHEEEEEECCCCCCCCCCCHHHH
AAIQTAEKVGFPEARIPLANAVIELCLSPKSNSAIMAIDAALADIRQGKSGEVPDHLRDG
HHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCCCCHHHHCC
HHSGAEKLGRAIDYKYPHNYDNAWVDQQYLPDRLKNKLYYAPKFTSKFEQTIAGVYQKIN
CCCCHHHHHHHCCCCCCCCCCCCCCCHHHCHHHHHCCEEECCCHHHHHHHHHHHHHHHHH
ENKAKKE
HHCCCCC
>Mature Secondary Structure 
AIQPLAYRMRPKALDEIVGQTHLVGKDKIIYRMVKAKQLSSMILYGPPGIGKTSIASAI
CCCCHHHHCCHHHHHHHHCCCEECCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHH
AGSTKYAFRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGA
HCCHHHHHHHHHHHHCCCCCHHHEEEHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCC
IILIGATTSNPYIAINPAIRSRTQIFELKPLTVEDIMITMDRALSDKERGLGNYDVEIDE
EEEEEECCCCCEEEECCCHHCCCEEEEECCCCHHHHHHHHHHHHCHHHCCCCCCCCCHHH
VAKKHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKKSLAHDKDGDA
HHHHHHCCCCCCHHHHHHHHHHEEEEECCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCH
HYDVLSAFQKSVRGSDVNAALHYMGRLIEAGDLVSISRRMLVMAYEDIGLASPQAGAHTL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHEEEEEECCCCCCCCCCCHHHH
AAIQTAEKVGFPEARIPLANAVIELCLSPKSNSAIMAIDAALADIRQGKSGEVPDHLRDG
HHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCCCCHHHHCC
HHSGAEKLGRAIDYKYPHNYDNAWVDQQYLPDRLKNKLYYAPKFTSKFEQTIAGVYQKIN
CCCCHHHHHHHCCCCCCCCCCCCCCCHHHCHHHHHCCEEECCCHHHHHHHHHHHHHHHHH
ENKAKKE
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]