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The map label for this gene is yngC [H]

Identifier: 226224101

GI number: 226224101

Start: 1514428

End: 1515054

Strand: Direct

Name: yngC [H]

Synonym: Lm4b_01510

Alternate gene names: 226224101

Gene position: 1514428-1515054 (Clockwise)

Preceding gene: 226224094

Following gene: 226224108

Centisome position: 51.99

GC content: 38.92

Gene sequence:

>627_bases
ATGTTACATACATTAATACAAAGTTTGCAAGATTTCACGATGTGGTTAGTAGACTCGCTTGGGCACTGGGGTATTTTCCT
CGGAATGCTGATTGAAAGTGTTTGTATACCGCTACCAAGTGAAGTTATTATGCTATTCGGTGGATTTATGGCGGAAGCTG
GGAAACTTAACTTCTGGCTCGTTGTCTTTGCTGGTATTGCTGGTAACTTAGTCGGTTCACTGATTGCTTACTACATCGGT
AAATTCGGTGGTAGAGCTTTAGTATTGAAATTCGGAAAGTATATATTCTTAAATGTGAAGCACTTGGATAAAGCGGAATT
ATGGTTTGGTCGTTACGGAGCAAGAGCTGTATTTTTCGGCCGAGTTTTGCCAGTCATCCGAACATTTATCTCTTTACCGG
CTGGAATTGCCAAAATGAATGTCTGGAAATTTGTTATATATACGATTTTAGGCTGCATTCCGTGGAATATTTTTCTGACA
TGGCTTGGTTATTCATTAGGTTCCAATTGGAGCGTTGTGGAAAAATATACGCGACCAATTAGCTATTTAATGTTAGCTTT
GGTTATTGCCATCGTTGTCTACCTTGCTTACAAAGTATGGAATAAACGCGCTAGAAATGCAAAATAA

Upstream 100 bases:

>100_bases
TGTTTTTTCGGTATAATAAATAGCGTGATTTAACGAACAAGACAGAATCAGTCAAAGACTTGCTTCTGCCAATTAATTAA
ATATTGAAGGAGTCTTTTGG

Downstream 100 bases:

>100_bases
AAAGCATGTCTTGACAGTTTTTGTCAGGACATGCTTTTTTAATTTTTATTCTTCGTCTTCGTCAGCTAAGAATGTTGCAA
GGATTTCTTCAATCATATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MLHTLIQSLQDFTMWLVDSLGHWGIFLGMLIESVCIPLPSEVIMLFGGFMAEAGKLNFWLVVFAGIAGNLVGSLIAYYIG
KFGGRALVLKFGKYIFLNVKHLDKAELWFGRYGARAVFFGRVLPVIRTFISLPAGIAKMNVWKFVIYTILGCIPWNIFLT
WLGYSLGSNWSVVEKYTRPISYLMLALVIAIVVYLAYKVWNKRARNAK

Sequences:

>Translated_208_residues
MLHTLIQSLQDFTMWLVDSLGHWGIFLGMLIESVCIPLPSEVIMLFGGFMAEAGKLNFWLVVFAGIAGNLVGSLIAYYIG
KFGGRALVLKFGKYIFLNVKHLDKAELWFGRYGARAVFFGRVLPVIRTFISLPAGIAKMNVWKFVIYTILGCIPWNIFLT
WLGYSLGSNWSVVEKYTRPISYLMLALVIAIVVYLAYKVWNKRARNAK
>Mature_208_residues
MLHTLIQSLQDFTMWLVDSLGHWGIFLGMLIESVCIPLPSEVIMLFGGFMAEAGKLNFWLVVFAGIAGNLVGSLIAYYIG
KFGGRALVLKFGKYIFLNVKHLDKAELWFGRYGARAVFFGRVLPVIRTFISLPAGIAKMNVWKFVIYTILGCIPWNIFLT
WLGYSLGSNWSVVEKYTRPISYLMLALVIAIVVYLAYKVWNKRARNAK

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=179, Percent_Identity=25.6983240223464, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788049, Length=192, Percent_Identity=29.1666666666667, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23558; Mature: 23558

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHTLIQSLQDFTMWLVDSLGHWGIFLGMLIESVCIPLPSEVIMLFGGFMAEAGKLNFWL
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH
VVFAGIAGNLVGSLIAYYIGKFGGRALVLKFGKYIFLNVKHLDKAELWFGRYGARAVFFG
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCHHHHHHHHHCCHHHHHH
RVLPVIRTFISLPAGIAKMNVWKFVIYTILGCIPWNIFLTWLGYSLGSNWSVVEKYTRPI
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
SYLMLALVIAIVVYLAYKVWNKRARNAK
HHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLHTLIQSLQDFTMWLVDSLGHWGIFLGMLIESVCIPLPSEVIMLFGGFMAEAGKLNFWL
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH
VVFAGIAGNLVGSLIAYYIGKFGGRALVLKFGKYIFLNVKHLDKAELWFGRYGARAVFFG
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCHHHHHHHHHCCHHHHHH
RVLPVIRTFISLPAGIAKMNVWKFVIYTILGCIPWNIFLTWLGYSLGSNWSVVEKYTRPI
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
SYLMLALVIAIVVYLAYKVWNKRARNAK
HHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]