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The map label for this gene is pepF1 [H]

Identifier: 226224094

GI number: 226224094

Start: 1507855

End: 1509663

Strand: Direct

Name: pepF1 [H]

Synonym: Lm4b_01503

Alternate gene names: 226224094

Gene position: 1507855-1509663 (Clockwise)

Preceding gene: 226224081

Following gene: 226224101

Centisome position: 51.77

GC content: 38.97

Gene sequence:

>1809_bases
ATGTCAAAAGATTATGCATTAACATGGGATTTAGAAAATATATATGCTGGCGGCAGCGGCTCTGAAGAATTACAACAAAC
GCTTCAAGAGGTAAAAGCTGATTTAGACAGCTTTGTTGTAAATGTTTCGGAGTGGGATGTTCCTGAAAATGTGGAAGCCT
CTGCTGAATTTTTACTTCTCGTTAATCAAAATGCAGATATATCTAAAATTTTACTCACAGCTGGATCATTTTTAGAATGT
CTTGCTTCCGCTGATATCAATGACTCGCGTGCAAATGAGCTTTCGGCGTTAATTTATCAATACGTTGCAACTCTAGCTAC
GGCCGAAGATGAATGGCATGACAAATTTGCACAAGTTTCTGACCGTGTTTGGGACGAATTAATGGAACAAAATGGTTTAT
CGCAAATTAGCTTTATTTTAAGTGAAGCGCGTACGAACCGCCGTAAAAAAGGGAGTAAAGAACAAGAAGCAGCTATTAAT
TCTTTAGCTGTCGATGGTTATCGCGGCTGGTCTGATCATTATGATACCATTGTCGGTAAACTCCGCATGCATGTTACCAT
TAACGGAGAAGAAAAAGATGTTTCTGCTGGCCAAGCGCTAAACTTATTAAATCACCCTGATCGCGCGGTTCGCCAAGCAG
TTTTTAAAGAATATACACGTGTATGGCAAAGTGAAGCTCGTTTATTTAGCGATACGTTAAATCATTTATCAGGATTCCGT
TTAGCTACATATGAAATTCGTAAATGGGATAATATTCTAGATGAACCTCTTGCAATTAATCGTTTAGATGAGCAAACGTT
AAAATCTATGTGGAATGTCATCCAAACGAACAAGCCTACTTTTGTTCGATTCTTAGATAGAAAAGCGAAATTACTTGGCC
TTGAAAAATTAAGTTTTTATGATGTAGAAGCTCCTCTTGTCTTTTCAAGCGAACCTAAGAAATATTCGTATCAAGAAGGC
GCTGAATTTATTATTGAGCAATTTAACAAATTCAGCCCGAAAATGGCAAACTTTGCGCAATCAGCGTTTGAAAAAGGTTG
GATTGAAGCGGAAGACCGTGATAATAAACGTCCTGGTGGTTTTTGTACCGACTTCCCTGTCGAAAAAGAAAGTCGCATTT
TCATGACATATGATGGCGCTCCAGGAACAGTCGCTACTCTTGCTCACGAACTTGGGCACGCATTCCATTCACACGTGATT
CGCGATGAACCCTTTGAAAATACTGATTATGCGATGAACGTGGCAGAAACCGCTTCAACTTTTGCAGAAATGATTATTGC
AGATGCTTCTGTGAAAGATGCAAAAACAAAAGAAGAAAAAATCACGTTGTTGGAAGATAAAATCGGTCGTAGTATCGCCT
TCTTTATGAATATTCATGCTCGCTTTATTTTTGAATGTAACTTCTATGAAGCACGTAAACAAGGTGTCGTTTCGGTTGAT
CGACTTAACGCTCTAATGGAAGAAGCGCAACGAGAAGCATACTTGGACGCCTTGGATGAATATCATCCACAATTCTGGGC
TTCTAAACTACATTTCTACATTGCTGATGTACCGTTTTATAACTTCCCGTACACTTTCGGTTATTTGTTCTCGCTTGGCA
TTTACCATAAAGCTCAAGCAGAAGGTGCTAGTTACGAAGATAAATACATTGCACTACTACAAGACACTGGTTCGATGACA
ACAGAACAGCTAGCAGAAAAACATCTGGGCGTTGACTTACGTAAAGCTGACTTCTGGGAAGAAGCTGTTGCTCTTGCTGC
CAAAGATGTAGAAGATTTCCTTACTTTAACAGAAGAATATATCAAATAA

Upstream 100 bases:

>100_bases
ATAATCTATAAATTTTACCATCTTTCTGCTTATTTTACAAAAAAACCTTAGAAAAATGCTATAATATGAAAGGAAACGTT
ATTTTTAAGGAGGTAAACAA

Downstream 100 bases:

>100_bases
AAAAATGCCTGGAGCTTAAAAACTCCAGGCATTTTTTAAATTGTTTTTAGTAATTCGATGATACATGTTGCGGATTGTTT
CGCTGCTAAGTGAATGAATT

Product: oligopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 602; Mature: 601

Protein sequence:

>602_residues
MSKDYALTWDLENIYAGGSGSEELQQTLQEVKADLDSFVVNVSEWDVPENVEASAEFLLLVNQNADISKILLTAGSFLEC
LASADINDSRANELSALIYQYVATLATAEDEWHDKFAQVSDRVWDELMEQNGLSQISFILSEARTNRRKKGSKEQEAAIN
SLAVDGYRGWSDHYDTIVGKLRMHVTINGEEKDVSAGQALNLLNHPDRAVRQAVFKEYTRVWQSEARLFSDTLNHLSGFR
LATYEIRKWDNILDEPLAINRLDEQTLKSMWNVIQTNKPTFVRFLDRKAKLLGLEKLSFYDVEAPLVFSSEPKKYSYQEG
AEFIIEQFNKFSPKMANFAQSAFEKGWIEAEDRDNKRPGGFCTDFPVEKESRIFMTYDGAPGTVATLAHELGHAFHSHVI
RDEPFENTDYAMNVAETASTFAEMIIADASVKDAKTKEEKITLLEDKIGRSIAFFMNIHARFIFECNFYEARKQGVVSVD
RLNALMEEAQREAYLDALDEYHPQFWASKLHFYIADVPFYNFPYTFGYLFSLGIYHKAQAEGASYEDKYIALLQDTGSMT
TEQLAEKHLGVDLRKADFWEEAVALAAKDVEDFLTLTEEYIK

Sequences:

>Translated_602_residues
MSKDYALTWDLENIYAGGSGSEELQQTLQEVKADLDSFVVNVSEWDVPENVEASAEFLLLVNQNADISKILLTAGSFLEC
LASADINDSRANELSALIYQYVATLATAEDEWHDKFAQVSDRVWDELMEQNGLSQISFILSEARTNRRKKGSKEQEAAIN
SLAVDGYRGWSDHYDTIVGKLRMHVTINGEEKDVSAGQALNLLNHPDRAVRQAVFKEYTRVWQSEARLFSDTLNHLSGFR
LATYEIRKWDNILDEPLAINRLDEQTLKSMWNVIQTNKPTFVRFLDRKAKLLGLEKLSFYDVEAPLVFSSEPKKYSYQEG
AEFIIEQFNKFSPKMANFAQSAFEKGWIEAEDRDNKRPGGFCTDFPVEKESRIFMTYDGAPGTVATLAHELGHAFHSHVI
RDEPFENTDYAMNVAETASTFAEMIIADASVKDAKTKEEKITLLEDKIGRSIAFFMNIHARFIFECNFYEARKQGVVSVD
RLNALMEEAQREAYLDALDEYHPQFWASKLHFYIADVPFYNFPYTFGYLFSLGIYHKAQAEGASYEDKYIALLQDTGSMT
TEQLAEKHLGVDLRKADFWEEAVALAAKDVEDFLTLTEEYIK
>Mature_601_residues
SKDYALTWDLENIYAGGSGSEELQQTLQEVKADLDSFVVNVSEWDVPENVEASAEFLLLVNQNADISKILLTAGSFLECL
ASADINDSRANELSALIYQYVATLATAEDEWHDKFAQVSDRVWDELMEQNGLSQISFILSEARTNRRKKGSKEQEAAINS
LAVDGYRGWSDHYDTIVGKLRMHVTINGEEKDVSAGQALNLLNHPDRAVRQAVFKEYTRVWQSEARLFSDTLNHLSGFRL
ATYEIRKWDNILDEPLAINRLDEQTLKSMWNVIQTNKPTFVRFLDRKAKLLGLEKLSFYDVEAPLVFSSEPKKYSYQEGA
EFIIEQFNKFSPKMANFAQSAFEKGWIEAEDRDNKRPGGFCTDFPVEKESRIFMTYDGAPGTVATLAHELGHAFHSHVIR
DEPFENTDYAMNVAETASTFAEMIIADASVKDAKTKEEKITLLEDKIGRSIAFFMNIHARFIFECNFYEARKQGVVSVDR
LNALMEEAQREAYLDALDEYHPQFWASKLHFYIADVPFYNFPYTFGYLFSLGIYHKAQAEGASYEDKYIALLQDTGSMTT
EQLAEKHLGVDLRKADFWEEAVALAAKDVEDFLTLTEEYIK

Specific function: Hydrolyzes peptides containing between 7 and 17 amino acids with a rather wide specificity [H]

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 68688; Mature: 68557

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDYALTWDLENIYAGGSGSEELQQTLQEVKADLDSFVVNVSEWDVPENVEASAEFLLL
CCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEECHHCCCCCCCCCCCEEEEE
VNQNADISKILLTAGSFLECLASADINDSRANELSALIYQYVATLATAEDEWHDKFAQVS
EECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
DRVWDELMEQNGLSQISFILSEARTNRRKKGSKEQEAAINSLAVDGYRGWSDHYDTIVGK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHE
LRMHVTINGEEKDVSAGQALNLLNHPDRAVRQAVFKEYTRVWQSEARLFSDTLNHLSGFR
EEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
LATYEIRKWDNILDEPLAINRLDEQTLKSMWNVIQTNKPTFVRFLDRKAKLLGLEKLSFY
EEEEHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHCCEE
DVEAPLVFSSEPKKYSYQEGAEFIIEQFNKFSPKMANFAQSAFEKGWIEAEDRDNKRPGG
ECCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
FCTDFPVEKESRIFMTYDGAPGTVATLAHELGHAFHSHVIRDEPFENTDYAMNVAETAST
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
FAEMIIADASVKDAKTKEEKITLLEDKIGRSIAFFMNIHARFIFECNFYEARKQGVVSVD
HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCEEEEEEECHHHHHHCCCCCHH
RLNALMEEAQREAYLDALDEYHPQFWASKLHFYIADVPFYNFPYTFGYLFSLGIYHKAQA
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
EGASYEDKYIALLQDTGSMTTEQLAEKHLGVDLRKADFWEEAVALAAKDVEDFLTLTEEY
CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IK
CC
>Mature Secondary Structure 
SKDYALTWDLENIYAGGSGSEELQQTLQEVKADLDSFVVNVSEWDVPENVEASAEFLLL
CCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEECHHCCCCCCCCCCCEEEEE
VNQNADISKILLTAGSFLECLASADINDSRANELSALIYQYVATLATAEDEWHDKFAQVS
EECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
DRVWDELMEQNGLSQISFILSEARTNRRKKGSKEQEAAINSLAVDGYRGWSDHYDTIVGK
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHE
LRMHVTINGEEKDVSAGQALNLLNHPDRAVRQAVFKEYTRVWQSEARLFSDTLNHLSGFR
EEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
LATYEIRKWDNILDEPLAINRLDEQTLKSMWNVIQTNKPTFVRFLDRKAKLLGLEKLSFY
EEEEHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHCCEE
DVEAPLVFSSEPKKYSYQEGAEFIIEQFNKFSPKMANFAQSAFEKGWIEAEDRDNKRPGG
ECCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
FCTDFPVEKESRIFMTYDGAPGTVATLAHELGHAFHSHVIRDEPFENTDYAMNVAETAST
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
FAEMIIADASVKDAKTKEEKITLLEDKIGRSIAFFMNIHARFIFECNFYEARKQGVVSVD
HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCEEEEEEECHHHHHHCCCCCHH
RLNALMEEAQREAYLDALDEYHPQFWASKLHFYIADVPFYNFPYTFGYLFSLGIYHKAQA
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
EGASYEDKYIALLQDTGSMTTEQLAEKHLGVDLRKADFWEEAVALAAKDVEDFLTLTEEY
CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7798200; 9209029 [H]