Click here to switch to the map view.

The map label for this gene is ybdM [H]

Identifier: 226223910

GI number: 226223910

Start: 1319611

End: 1320117

Strand: Reverse

Name: ybdM [H]

Synonym: Lm4b_01317

Alternate gene names: 226223910

Gene position: 1320117-1319611 (Counterclockwise)

Preceding gene: 226223911

Following gene: 226223909

Centisome position: 45.32

GC content: 37.87

Gene sequence:

>507_bases
ATGAATTACAAGAGCCCAGTATATAGCGTTACTCCCATTCACTACACAAAATTACAAGCAAATAATTATAATCCCAACAC
TGTCCCCGCAACCGAACTCAAACTACTTGAAAAATCAATTTGGGAAGATGGGTTTACGCAACCAATTGTTTGTTATCCCT
TGGAAGACAGCGATAAATATGAAATAATAGATGGGTTCCACCGTTACACTATCATGAGAACCTCTAAACGAATTCGAGAA
CGAGAAAATGAATTCTTACCAGTAGTCATCTTAGAAAAGGACACCGTGAATCGAATGGCCTCTACAATACGTCATAATCG
TGCGCGCGGATTTCATAATGTCGAATTAATGTCCAACATTGTTAGTGAACTTGTAGATAGCGGGATGTCCGATAGTTGGA
TTATGAAAAATATTGGAATGGATGCTAATGAAATCTTACGCTTAAAACAAGTGAGCGGACTTGCTCACCTCTTCTTAGAT
AAAGAATTCAGTCACACATCTGATTAA

Upstream 100 bases:

>100_bases
TTATACCTGCAAATATATGGGATTCGGCCAAACAAAATTGGAATTAGAAAAAAGAAAAAACGCATTAGAGAAATATAATA
ATATTTTATGAGGTGAACTA

Downstream 100 bases:

>100_bases
TTGATGAAAAGAGGTTTAATAATGAAAGAAAATAAATACGATGACAAACATTTTTTCGAACAATATAGCCAAATGCCTCG
CTCGAAAGAAGGATTAAAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MNYKSPVYSVTPIHYTKLQANNYNPNTVPATELKLLEKSIWEDGFTQPIVCYPLEDSDKYEIIDGFHRYTIMRTSKRIRE
RENEFLPVVILEKDTVNRMASTIRHNRARGFHNVELMSNIVSELVDSGMSDSWIMKNIGMDANEILRLKQVSGLAHLFLD
KEFSHTSD

Sequences:

>Translated_168_residues
MNYKSPVYSVTPIHYTKLQANNYNPNTVPATELKLLEKSIWEDGFTQPIVCYPLEDSDKYEIIDGFHRYTIMRTSKRIRE
RENEFLPVVILEKDTVNRMASTIRHNRARGFHNVELMSNIVSELVDSGMSDSWIMKNIGMDANEILRLKQVSGLAHLFLD
KEFSHTSD
>Mature_168_residues
MNYKSPVYSVTPIHYTKLQANNYNPNTVPATELKLLEKSIWEDGFTQPIVCYPLEDSDKYEIIDGFHRYTIMRTSKRIRE
RENEFLPVVILEKDTVNRMASTIRHNRARGFHNVELMSNIVSELVDSGMSDSWIMKNIGMDANEILRLKQVSGLAHLFLD
KEFSHTSD

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786817, Length=163, Percent_Identity=47.8527607361963, Blast_Score=150, Evalue=6e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 19511; Mature: 19511

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYKSPVYSVTPIHYTKLQANNYNPNTVPATELKLLEKSIWEDGFTQPIVCYPLEDSDKY
CCCCCCCEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
EIIDGFHRYTIMRTSKRIRERENEFLPVVILEKDTVNRMASTIRHNRARGFHNVELMSNI
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHH
VSELVDSGMSDSWIMKNIGMDANEILRLKQVSGLAHLFLDKEFSHTSD
HHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNYKSPVYSVTPIHYTKLQANNYNPNTVPATELKLLEKSIWEDGFTQPIVCYPLEDSDKY
CCCCCCCEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
EIIDGFHRYTIMRTSKRIRERENEFLPVVILEKDTVNRMASTIRHNRARGFHNVELMSNI
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHH
VSELVDSGMSDSWIMKNIGMDANEILRLKQVSGLAHLFLDKEFSHTSD
HHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]