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The map label for this gene is ybdN [H]

Identifier: 226223911

GI number: 226223911

Start: 1320127

End: 1321431

Strand: Reverse

Name: ybdN [H]

Synonym: Lm4b_01318

Alternate gene names: 226223911

Gene position: 1321431-1320127 (Counterclockwise)

Preceding gene: 226223912

Following gene: 226223910

Centisome position: 45.37

GC content: 35.48

Gene sequence:

>1305_bases
ATGCTTTCTAGAACAGTCTTTGATGCTTCCCAAGAAAGAATGGAAGCGATTTTTTCTGAATTCGATAATATTATTGTGTC
GTTTTCGGGTGGTAAAGATAGCGCAGTAATGCTCCATCTCATGATTGACTACATGCGGAAAAATAATATTCGCAAGAAAA
TATATGTATATCATTTAGATTATGAAGGTCAATACAGCGCTACAACTGATTTTGTTACTGAAATGCTTACAACTAATTTA
GATATCATCGAACCACTTTGGTGTTGTCTTCCCATCGCGGCACAATCAGCTGTTTCGATGTTCACCGACCACTGGAAACC
GTGGGAAAAGACCAAGCAAAACATCTGGGTTAGAGATATGCCCACCTTTCCACACGTGATTAATGAAGACAATGCCCCGT
TTGACTTTGATTTTGAAAACCTTTGGGATTATGAATTTAATAAAAAAATAATTAACTGGTTACATACTAAAAATAACGCC
CAAAAAACCATTGCTTTGATTGGTATAAGACAACAAGAATCTCTTAATCGCTATAACGCAATTCATAAAAAAGAACGAAT
GTATAAAACATACAATTGGACGACCGAAATTTCCAAAAACATTTACAACGCCTATCCAATTCACGATTGGCAAGTAGAAG
ATATATGGGTCGCAAATGCAAAGTTCAATTGGTCTTATAATAAAATTTATGATTTATTTTATCATGCTGGCCTAACTGTG
CACGAGATGCGTGTCGCCAGTCCTTTTAACGATGCTGCTACAGAAAGTCTTAAACTGTACAGGGTCATCGAACCTGCGCT
TTGGTCCAAATTAGTCGGCCGGGTGAATGGCGCCAATTTCACTGCCATATACGGTGGCACTTCCGCAATGGCTTGGAAAG
AAATTAAACTACCTAAAAATCATACTTGGAAATCATATTTGGAATTTTTACTCACAACTTTACCAAGTTACACTAGAGAA
CGCTATTTAAAAAAATTCAAAACAAGTATTACCTATTGGACCGAAAAAGGTGGTGCTTTAAAAGTAGAAACTGTAGAAGA
ATTAAAAAATTTAGATATACAAGCAGACTTCCTAGGTAAACCACAAAATAACCGAGTATATACTAATCCAATGGAAATCG
TTCGTTTTAAGGAGTATCCAGACGATTTGAAAATCAAAGAATTCGCAAGCGTTCCTACCTACAAACGCATGTGCATAGCA
ATATTGAAGAATGATTATACCTGCAAATATATGGGATTCGGCCAAACAAAATTGGAATTAGAAAAAAGAAAAAACGCATT
AGAGAAATATAATAATATTTTATGA

Upstream 100 bases:

>100_bases
CTGGATTCTCTTATTGATACAAATATTTCTAAGAAAACAAGCTTATTGCAAGAATTTAAAAAAGAACTCTCACAAAAAAA
TTCTTTTGAGGTGATAATGG

Downstream 100 bases:

>100_bases
GGTGAACTAATGAATTACAAGAGCCCAGTATATAGCGTTACTCCCATTCACTACACAAAATTACAAGCAAATAATTATAA
TCCCAACACTGTCCCCGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MLSRTVFDASQERMEAIFSEFDNIIVSFSGGKDSAVMLHLMIDYMRKNNIRKKIYVYHLDYEGQYSATTDFVTEMLTTNL
DIIEPLWCCLPIAAQSAVSMFTDHWKPWEKTKQNIWVRDMPTFPHVINEDNAPFDFDFENLWDYEFNKKIINWLHTKNNA
QKTIALIGIRQQESLNRYNAIHKKERMYKTYNWTTEISKNIYNAYPIHDWQVEDIWVANAKFNWSYNKIYDLFYHAGLTV
HEMRVASPFNDAATESLKLYRVIEPALWSKLVGRVNGANFTAIYGGTSAMAWKEIKLPKNHTWKSYLEFLLTTLPSYTRE
RYLKKFKTSITYWTEKGGALKVETVEELKNLDIQADFLGKPQNNRVYTNPMEIVRFKEYPDDLKIKEFASVPTYKRMCIA
ILKNDYTCKYMGFGQTKLELEKRKNALEKYNNIL

Sequences:

>Translated_434_residues
MLSRTVFDASQERMEAIFSEFDNIIVSFSGGKDSAVMLHLMIDYMRKNNIRKKIYVYHLDYEGQYSATTDFVTEMLTTNL
DIIEPLWCCLPIAAQSAVSMFTDHWKPWEKTKQNIWVRDMPTFPHVINEDNAPFDFDFENLWDYEFNKKIINWLHTKNNA
QKTIALIGIRQQESLNRYNAIHKKERMYKTYNWTTEISKNIYNAYPIHDWQVEDIWVANAKFNWSYNKIYDLFYHAGLTV
HEMRVASPFNDAATESLKLYRVIEPALWSKLVGRVNGANFTAIYGGTSAMAWKEIKLPKNHTWKSYLEFLLTTLPSYTRE
RYLKKFKTSITYWTEKGGALKVETVEELKNLDIQADFLGKPQNNRVYTNPMEIVRFKEYPDDLKIKEFASVPTYKRMCIA
ILKNDYTCKYMGFGQTKLELEKRKNALEKYNNIL
>Mature_434_residues
MLSRTVFDASQERMEAIFSEFDNIIVSFSGGKDSAVMLHLMIDYMRKNNIRKKIYVYHLDYEGQYSATTDFVTEMLTTNL
DIIEPLWCCLPIAAQSAVSMFTDHWKPWEKTKQNIWVRDMPTFPHVINEDNAPFDFDFENLWDYEFNKKIINWLHTKNNA
QKTIALIGIRQQESLNRYNAIHKKERMYKTYNWTTEISKNIYNAYPIHDWQVEDIWVANAKFNWSYNKIYDLFYHAGLTV
HEMRVASPFNDAATESLKLYRVIEPALWSKLVGRVNGANFTAIYGGTSAMAWKEIKLPKNHTWKSYLEFLLTTLPSYTRE
RYLKKFKTSITYWTEKGGALKVETVEELKNLDIQADFLGKPQNNRVYTNPMEIVRFKEYPDDLKIKEFASVPTYKRMCIA
ILKNDYTCKYMGFGQTKLELEKRKNALEKYNNIL

Specific function: Unknown

COG id: COG3969

COG function: function code R; Predicted phosphoadenosine phosphosulfate sulfotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786818, Length=435, Percent_Identity=30.1149425287356, Blast_Score=191, Evalue=9e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021845
- InterPro:   IPR002500
- InterPro:   IPR014729 [H]

Pfam domain/function: PF11922 DUF3440; PF01507 PAPS_reduct [H]

EC number: NA

Molecular weight: Translated: 51299; Mature: 51299

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRTVFDASQERMEAIFSEFDNIIVSFSGGKDSAVMLHLMIDYMRKNNIRKKIYVYHLD
CCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEC
YEGQYSATTDFVTEMLTTNLDIIEPLWCCLPIAAQSAVSMFTDHWKPWEKTKQNIWVRDM
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCEEEEEC
PTFPHVINEDNAPFDFDFENLWDYEFNKKIINWLHTKNNAQKTIALIGIRQQESLNRYNA
CCCCHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHH
IHKKERMYKTYNWTTEISKNIYNAYPIHDWQVEDIWVANAKFNWSYNKIYDLFYHAGLTV
HHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEECEEEEEEEEECCCHHHHHHHHHHCCCEE
HEMRVASPFNDAATESLKLYRVIEPALWSKLVGRVNGANFTAIYGGTSAMAWKEIKLPKN
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHEEEEECCCCC
HTWKSYLEFLLTTLPSYTRERYLKKFKTSITYWTEKGGALKVETVEELKNLDIQADFLGK
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEECCCCEEEEHHHHHHHCCCEEEEECCC
PQNNRVYTNPMEIVRFKEYPDDLKIKEFASVPTYKRMCIAILKNDYTCKYMGFGQTKLEL
CCCCCEEECHHHHHEECCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCHHHHH
EKRKNALEKYNNIL
HHHHHHHHHHHCCC
>Mature Secondary Structure
MLSRTVFDASQERMEAIFSEFDNIIVSFSGGKDSAVMLHLMIDYMRKNNIRKKIYVYHLD
CCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEC
YEGQYSATTDFVTEMLTTNLDIIEPLWCCLPIAAQSAVSMFTDHWKPWEKTKQNIWVRDM
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCEEEEEC
PTFPHVINEDNAPFDFDFENLWDYEFNKKIINWLHTKNNAQKTIALIGIRQQESLNRYNA
CCCCHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHH
IHKKERMYKTYNWTTEISKNIYNAYPIHDWQVEDIWVANAKFNWSYNKIYDLFYHAGLTV
HHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEECEEEEEEEEECCCHHHHHHHHHHCCCEE
HEMRVASPFNDAATESLKLYRVIEPALWSKLVGRVNGANFTAIYGGTSAMAWKEIKLPKN
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHEEEEECCCCC
HTWKSYLEFLLTTLPSYTRERYLKKFKTSITYWTEKGGALKVETVEELKNLDIQADFLGK
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEECCCCEEEEHHHHHHHCCCEEEEECCC
PQNNRVYTNPMEIVRFKEYPDDLKIKEFASVPTYKRMCIAILKNDYTCKYMGFGQTKLEL
CCCCCEEECHHHHHEECCCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCHHHHH
EKRKNALEKYNNIL
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]